Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2969 ATGGATGATGATATCTTCAATCAAAGTGATAACTCATTTGATGAGCAAGGGTTCCTCAGAGAGATCCTTCAGTTACCAGATTTCTCACCTCAAAGTGATGAAACCTCCTCCCCTTGTCCTTATTTCAAAATCCAAAACAACATTTCTGTAGATGGTGTCACCAGCCCACCCAATAGTATAAGCACTCTGTCCCTTGAGGAGACAGGTTTTGAAAGGAATGACCCTCTTCACAAGAGTCACAGCTCCAACTCTATCATGTCTTTGGAAAATAATCTCAATTCTCCAACCACATACCTTTTATCTTTTGACAAGTCCAGTGTTGAACAAATCACTCATGAATCTTCCCCAGATCATAACTCTGTATTGAGATCCAATAACAGGACTAGAGGATCTGAATTAACACCAGGGATGCACCAAGCAACTAAGAAGGTGAGAAGGTCAGGAACACCACATCACATAATGGCAGAGAGAAAACGAAGAAAGGAGTTGACACAGAACATCATAGCACTTTCAGCAACAATACCTGGATTGAAGAAGACAGACAAGGTTTATGTTCTTCGTGAAGCCATCAATTACACAAAACAACTTCAGGAGCGCGTTAAAGAGTTGGAGAATCAAAACAGAGATAAAAATGTAGATTCAGCAACATTCACCATGAAATCTCAAGATTCCTCAAATAAAAGCACCACCTATTGTGAAACAAACAGAGAATCACTGCCAATTGGTGTCAAAGCAAGAGTCCTAGAGAAGGAAGTGAATGTTGGAATCCATTGTGAGAAGCAAAAAGACATAGTGCACAATATTTATGTCTTGCTTGAAAAGATCCATCTCTCTGTGACATGTAGTAGCGTGTTACCATTTGGGACTTCTCTCATAATTAACATTATTGCTCAGATGGATGATGAATACAACATGAGCATTGATGAGCTAGTGAAAAACCTGAAAGAATATATGTTGGAGGCATGCGGCGTGCAATAG 978 0.3967 MDDDIFNQSDNSFDEQGFLREILQLPDFSPQSDETSSPCPYFKIQNNISVDGVTSPPNSISTLSLEETGFERNDPLHKSHSSNSIMSLENNLNSPTTYLLSFDKSSVEQITHESSPDHNSVLRSNNRTRGSELTPGMHQATKKVRRSGTPHHIMAERKRRKELTQNIIALSATIPGLKKTDKVYVLREAINYTKQLQERVKELENQNRDKNVDSATFTMKSQDSSNKSTTYCETNRESLPIGVKARVLEKEVNVGIHCEKQKDIVHNIYVLLEKIHLSVTCSSVLPFGTSLIINIIAQMDDEYNMSIDELVKNLKEYMLEACGVQ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2969 325 Pfam Helix-loop-helix DNA-binding domain 151 197 IPR011598 GO:0046983
Lja1g2969 325 MobiDBLite consensus disorder prediction 111 150 - -
Lja1g2969 325 Gene3D - 137 211 IPR036638 GO:0046983
Lja1g2969 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Lja1g2969 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 211 IPR036638 GO:0046983
Lja1g2969 325 PANTHER BHLH TRANSCRIPTION FACTOR 7 322 - -
Lja1g2969 325 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 322 - -
Lja1g2969 325 MobiDBLite consensus disorder prediction 111 135 - -
Lja1g2969 325 Coils Coil 186 213 - -
Lja1g2969 325 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2969 Lja-Chr1 36070891 36076333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2969 96 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.402 8.21e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g2969 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2969 - - aprc:113863851 351.288