Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2963 ATGCTAACCCTCTTGTTCTCCTTGTTCTGTTTCCTCTTCTCCTCCAAAACTTTTGTACCATCCACCACCATAACCACCGCCACCACCACCAAAATCACCACCAGAAGAATCCTCCATGAACCCTTTATGCCATTGAACACCCAACCTCCATCTGAACCACCAAAACCACCACCACATCACCCTAACTCCCCTTCAACCCAAATCCCCAAACACCCATTTTCCACCACCACCCCAGCCTCCACCACCACCCCAACCACAACAAATGACAACCAAGACCAGTCCCCATTTTTCCCAAATTACCCTTCTACCCCCACCCCTCCCCCTCCTTCTCCCATCACCTTTGCTTCCTTCCCAGCCAACATCTCCTCTCTTGTCATCCCTCACTCTTCCCAACCCACCACCTCTTCCAACAAACACCTCCCCGTCGCCCTCTCCGTCACCGCCTGCGCCGCCGTCGCTGTCGCCGTCGTCGCCTTCATCTACTACCGCCGGCGCGTCCGAAACCGCCGCGACGCCGCCGACAGCAAGGCCTTCAGCTCCGACAGCAGCTTCGGACTGTTCCCGCACAATGCCGACATTGGAGCCCGCAGCTCCGAGTTCCTCTACCTCGGCACCGTCGTGAACTCGCGTGGAATCGACGACGCTCCACGTGGCGGCGGCATGGCTGAGACCCGGAGAATGGAGTCGCCGGAGCTCCGGCCTCTTCCGCCGCTTGCACGTCTCCCTGCGCCTCCGTTGCCTGCCCATAGTGACGCGGGTTCGGAGGAGGAAGACGAAGAGTTTTACTCGCCAAGAGGGTCATCCTTGGGTGGCCGTGAGAGCTCCATCGGAACAGAATCAGGTTCCCGGCGAGTGTTCTCCGCCGTTTCCGGCGAGAATTTCGCCGGCAGAACCTCCAGCTCGCGCTCCTCTTCCTCCTCTGTTTCTCCAGAACAGTCTCATTCCATCACCCTCTCGCCGCCGGCGAGTTTTAGTCCCCGGAGAAGACAATCAAAGTCACCGGAAACCACCCCACCCCACAATGCAGAACTAGTCTCATCATCAACTCACAACCAGAACGTTCAATCCTCTTCATGTTCTTGCTCTTCTTCGTTTTCTTCATCACACTCAACGCCAGAGAGAGATTCTGTAGAAGAAGATACTCACTCTCCTTCAATCTCTCAACATTCCTCATCACCTAACAAAATTCTGGAGAAAAATCCAAATGGGTCATCAGAAGAGAAGATTCTGGAGAGTAATGAAGATCCATCACTATCACTGAAGTTTCATTCAGAACAAGAACTACTAAGGCTATCTAATGCTTCTAGTGAAAGTGGAAACTCTGTGTCTTCATCTTCAGCTTTTTCTCTACCTTCTTCGCCGGAGAAGATGGTGCACCATCACAGTTTTGATCAGTCTCCGAGAATATCAAGTGTCTCTGACAGGTTAAAGCTACCGGGGTTGTCATCACTGCCTCTGTCACCCACCCTGCTTTCATCACCGGAAACTGAAAGAGGTTTCATTGGATTTTTCAATGCTGTGCCTCAGAGGAAACAATGGGAAATTCCTGTGTTGTCAACTGCATCTGTTGACAATGTTGTGGATCAAACTGCAGGGTTTCCGGTTCCTCCACAGAGGAAACAATGGGAGGTTCCAATTCTTTCAACCCGGGTTGCTCCATTACATCCACTGCCGCCACCACCGCCTCCTCCTCCGCTGCAGCAGCAGCGGAGACAGTGGGAAACCCCACCTCCCTTGAAGGCTGTTGGGGAACCCATTTGGGGACCGCCGGAGTTAATGCCTCCTTCCAGGCCTTTTGTGTTGAAAAAACCAGCAACCAATGTTTCTCCTGTTGAGTTGCCATTGCCACAGAGTTTGAGAGAAGCTGAAGAGCCCTTGAAACCCAGGTTGAAGGCCCTGCATTGGGACAAAGTGAGAACAAGCTCTAGTCGCGAAATGGCGTGGGATCAGCTGAAGTCGAGCTCGTTTAGATTGAATGAGGAAATGATTGAAACATTGTTTGTCAACACAACAAACCAGAAACCCAAGGCTGCTACTCCACGCTCTGTTCTTCCCCCACAAAATCAAGAGGACAGAGTACTTGATCCTAAAAAGTCTCAAAATATTGCGATCATGCTCAAAGCTCTTAATGTCTCTACAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAAAACTGATACACTCGGAGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAACTGAAGGAACATAAAGACGACTCATCAATCAAACTTGGTCTGGCTGAGAAATTTTTGAAGGCTGTTCTTGAAGTACCTTTCGCATTTAAAAGAGTTGCAGCAATGCTTTACATGGTCAATTTTGAGTCTGAAGTGGAGTATCTTAGGAAATCATTTCGAACTCTAGAGGCTGCGTGTGAAGAGTTGCGAAATTGTAGAATGTTCTTGAAGCTTCTACAGGCTGTACTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGCGGCGATGCAAAGGCCTTCAAACTTGATACACTTCTCAAGCTGGCTGATGTCAAAGGGGCAGATGGGAAAACCACTCTACTGCATTTTGTTGTGCAGGAAATTATTCGAACTGAAGGTGCTCGTAGTCTCTCTGGTACTAATCAAACTCCAAGCTCTACTTTGAGTGAAGACAAAGACGCAAGGTGCAGGAAGCTTGGCCTACAAGTTGTATCTAGTCTGAGCACAGATCTATCAAATGTGAAGAAGGCTGCTACAATGGATTCTGAAGTTCTCAGCAGCGATGTCCTTAAACTTTCCAAAGGAATTGCGAACACTGCAGAGGTTGTTCAGTTAAACCAAACTGTGGCGGGATCAGATGAAAGGACTCAGAAATTTGCTGCATTCTTGAACAATTTTATTAGAATGGCTAAGGAGGAAACTCTGAAGATTCAAGCCCAAGAAAATGTTGCTTTGTCCCTTGTGAAGGAGATTACTGAGTATTTTCATGGGGACTTGGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCATGGTTGTAAGAGACTTTTTAGCGGTTCTTGACCGGGTCTGCAAAGAAGTTGGGATCATAAATGAGAGAACCATGGTTAGTTCAGCTCATACATTTCCTGTTCCAGTTAATCAAATGCTTCCAGAACCCCTTCCTGGATTGCATAAAAGGCAAGAGTGTAATAACTAA 3204 0.4869 MLTLLFSLFCFLFSSKTFVPSTTITTATTTKITTRRILHEPFMPLNTQPPSEPPKPPPHHPNSPSTQIPKHPFSTTTPASTTTPTTTNDNQDQSPFFPNYPSTPTPPPPSPITFASFPANISSLVIPHSSQPTTSSNKHLPVALSVTACAAVAVAVVAFIYYRRRVRNRRDAADSKAFSSDSSFGLFPHNADIGARSSEFLYLGTVVNSRGIDDAPRGGGMAETRRMESPELRPLPPLARLPAPPLPAHSDAGSEEEDEEFYSPRGSSLGGRESSIGTESGSRRVFSAVSGENFAGRTSSSRSSSSSVSPEQSHSITLSPPASFSPRRRQSKSPETTPPHNAELVSSSTHNQNVQSSSCSCSSSFSSSHSTPERDSVEEDTHSPSISQHSSSPNKILEKNPNGSSEEKILESNEDPSLSLKFHSEQELLRLSNASSESGNSVSSSSAFSLPSSPEKMVHHHSFDQSPRISSVSDRLKLPGLSSLPLSPTLLSSPETERGFIGFFNAVPQRKQWEIPVLSTASVDNVVDQTAGFPVPPQRKQWEVPILSTRVAPLHPLPPPPPPPPLQQQRRQWETPPPLKAVGEPIWGPPELMPPSRPFVLKKPATNVSPVELPLPQSLREAEEPLKPRLKALHWDKVRTSSSREMAWDQLKSSSFRLNEEMIETLFVNTTNQKPKAATPRSVLPPQNQEDRVLDPKKSQNIAIMLKALNVSTEEVCEALLEGKTDTLGAELLESLLKMAPSKEEERKLKEHKDDSSIKLGLAEKFLKAVLEVPFAFKRVAAMLYMVNFESEVEYLRKSFRTLEAACEELRNCRMFLKLLQAVLKTGNRMNVGTNRGDAKAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARSLSGTNQTPSSTLSEDKDARCRKLGLQVVSSLSTDLSNVKKAATMDSEVLSSDVLKLSKGIANTAEVVQLNQTVAGSDERTQKFAAFLNNFIRMAKEETLKIQAQENVALSLVKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERTMVSSAHTFPVPVNQMLPEPLPGLHKRQECNN* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2963 1067 MobiDBLite consensus disorder prediction 672 686 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 66 98 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 426 452 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 212 471 - -
Lja1g2963 1067 SUPERFAMILY Formin homology 2 domain (FH2 domain) 556 1032 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 401 421 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 42 114 - -
Lja1g2963 1067 Gene3D Formin, FH2 domain 620 1030 IPR042201 -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 383 400 - -
Lja1g2963 1067 ProSiteProfiles Formin homology-2 (FH2) domain profile. 620 1048 IPR015425 -
Lja1g2963 1067 PANTHER FORMIN-RELATED 14 1065 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lja1g2963 1067 SMART it6_source 620 1037 IPR015425 -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 268 371 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 672 694 - -
Lja1g2963 1067 Pfam Formin Homology 2 Domain 624 1022 IPR015425 -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 553 571 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 99 114 - -
Lja1g2963 1067 PANTHER FORMIN-LIKE PROTEIN 1 14 1065 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 46 65 - -
Lja1g2963 1067 MobiDBLite consensus disorder prediction 553 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2963 Lja-Chr1 35983611 35988851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2963 573 1064 FH2 protein (formin) Gene Family AT3G25500 68.600 0.0 669