Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2959 ATGGCCGGCATAGACTTGGGTTCAGCATCACACTTTGTTCATCGCCTTCAACGCCCTGACCTTGAAGATCATGATGAGAACCAAGACCAAGATGGAAACAACAACAGCAATGAAGGGCTTGACCTAGCTACACAAAATCAAGGTCCTGGTGATGTTGTCGGTCGGAGGCCAAGGGGAAGACCACCAGGATCAAAGAATAAGCCTAAACCACCCGTGATCATCACAAGGGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTCAGCAGTGGTTGTGATGTGTTTGACTCAGTCGCTACCTATGCAAGGAAACGGCAGAAAGGGATCTGTGTTCTCAGCGGCAGTGGCACCGTCACCAACGTCACACTACGGCAGCCAGCTGCCGCCGGCGCTGTGGTGACACTGCACGGAAGGTTTGAGATATTGTCCTTATCAGGATCGTTCCTCCCACCTCCAGCTCCACCAGGTGCCACAAGTTTGAGTGTGTTCCTTGGTGGGGGTCAAGGTCAGGTTGTGGGAGGAAATGTTGTTGGCCCTTTGGTGGCTTCTGGGCCAGTTATTGTGATTGCTTCATCATTTACTAATGTTGCGTATGAGAGGTTGCCCTTGGAGGAAGATGAATCTCTTCAGATGCAACAAGGTCAATCATCTGCTGGTGGCGGTAGTGGCAGTGGTGGTGGTGGAGGAGTTAATAACTCTTTCCCTGACCCATCTTCAGGGCTTCCGTTCTTCAATTTACCCCTAAACATGCCTCAATTACCAGTTGATGGTTGGGCTGGAAACTCCGGTGGAAGGCAATCTTATTGA 810 0.5074 MAGIDLGSASHFVHRLQRPDLEDHDENQDQDGNNNSNEGLDLATQNQGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQKGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLEEDESLQMQQGQSSAGGGSGSGGGGGVNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2959 269 MobiDBLite consensus disorder prediction 209 240 - -
Lja1g2959 269 MobiDBLite consensus disorder prediction 1 73 - -
Lja1g2959 269 PIRSF ESCAROLA 4 264 IPR014476 GO:0003680
Lja1g2959 269 Gene3D - 82 217 - -
Lja1g2959 269 CDD DUF296 83 165 IPR005175 -
Lja1g2959 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 269 - -
Lja1g2959 269 ProSiteProfiles PPC domain profile profile. 79 215 IPR005175 -
Lja1g2959 269 MobiDBLite consensus disorder prediction 207 247 - -
Lja1g2959 269 MobiDBLite consensus disorder prediction 15 31 - -
Lja1g2959 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Lja1g2959 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 269 IPR014476 GO:0003680
Lja1g2959 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2959 Lja-Chr1 35920524 35921871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2959 1 266 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.000 2.24e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2959 - - gmx:100814613 414.846