Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2954 ATGGGTAAGGCTCAAAACGTTGTTGATGTTGAGGATGGAACCTTGGAGATTGGAATGGAGTACAGAACTGTGTCTGGAGTTGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGGACCAAAATTTCAAGAGATTGTTAATATTCGCTTAGGGGATGGTACCACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACTACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCACTGGACATGCTTGGCCGCATATTTAATGGTTCAGGAAAACCTATTGATAATGGTCCGCCCATATTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATTCAGACAGGAATATCCACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGACTCCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAAGCTGGCTTAGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGGTGGAGAAGACGACAACTTTGCCATTGTCTTTGCAGCTATGGGAGTTAACATGGAGACAGCACAGTTTTTTAAACGCGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAACGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGGAAGCATGTTCTTGTTATACTCACAGATATGAGCTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGAGAAGAAGTACCCGGTAGACGTGGGTATCCTGGTTACATGTATACAGATCTGGCAACAATATATGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAGATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACGGGATATATTACTGAGGGGCAGATATACATTGACAGGCAGTTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGAGTGCCATCGGTGAGGGAATGACTCGAAGGGATCATTCTGACGTTTCCAATCAGCTTTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGTTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAATTTGTCGCCCAAGGAGCTTATGATACCCGGAACATCTTCCAGTCACTTGATCTTGCATGGACTTTGCTCCGGATTTTCCCTCGTGAGCTTCTTCATCGTATTCCTGCCAAGACTCTTGATCAATACTACAGCCGTGATGCCGGTAACTGA 1467 0.4315 MGKAQNVVDVEDGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2954 488 CDD V_A-ATPase_B 92 379 - -
Lja1g2954 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Lja1g2954 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Lja1g2954 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Lja1g2954 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Lja1g2954 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 4 488 - -
Lja1g2954 488 Gene3D - 29 487 - -
Lja1g2954 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Lja1g2954 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Lja1g2954 488 PIRSF V-ATPsynth_beta/V-ATPase_B 12 488 IPR022879 -
Lja1g2954 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 4 488 IPR022879 -
Lja1g2954 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Lja1g2954 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2954 Lja-Chr1 35887988 35894366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2954 1 488 Primary Pumps ATPases(2) AT4G38510 96.926 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2954 K02147 - gmx:100793764 948.732