Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2953 ATGTTACCAGAGTTGATGAACTTTCTGACGGCGTGCTTTCAACCGCGTTTGGATCGATATGCACGCAGTGGTTCAGATGCTGGAGGTAAACAAGATGGGCTCTTGTGGTACAAGGACTCGGGGAAGCACTTGAATGGCGAGTTTTCAATGGCTGTGGTCCAAGCCAACAACTTGCTGGAGGATCAGAGCTATCTTGAATCAGGTAGCTTGAGCACCAGTGATTCTGGGCCTTATGGCACTTTTGTTGGTGTCTATGATGGGCATGGAGGGCCTGAGACATCGCGTTATATCAATGAACACCTAGTTCGCCATCTCAAGAGGTTTGCTGCAGAACAACAGTCAATGTCGGTGGATGTAATTCGGAAGGCAATCCAAGCAACAGAAGATGGATTTATGTCACTTGTTGCCAAACAGTGGTCAATGAAACCACAAATTGCAGCTGTTGGATCATGCTGTCTTATTGGCGTGATTTGTAATGGAACACTGTACATCGCAAATCTTGGCGATTCCCGGGCTGTTCTGGGAAGAGCGGTCAAGGCAACTGGGGAGGTTTTAGCGATGCAATTGTCAGCAGAGCATAATGCAGCAATAGAGTCTGTAAGACATGAGCTGCAATCTTTGCATCCTGATGATTCAAACATTGTTGTTTTGAAGCATAATGTATGGCGCGTGAAGGGCCTAATACAAATCTCTAGATCTATTGGTGATGTATATCTTAAAAAGGCCGAGTTCAATAGAGAACCACTATATGCTAAGTTTAGACTTCGTGAGCCGATCAAGAGGCCGATATTGAGCTCAGAACCAGCAATATCAGTGCACCAGTTGCAGCCACATGATCAGTTTATTATATTTGCATCTGATGGATTGTGGGAGCACTTTACCAATCAAGATGCTGTTGATATAGTTCAAAATCATCCCCACAATGGAATTGCAAAGAGGCTGGTGAAAATGGCCCTTCAGGAAGCAGCAAAGAAGAGAGAAATGAGATATTCTGACCTGAAAAAAATTGACCGCGGGGTTCGTCGGCATTTCCACGATGATATCACAGTGATTGTTGTGTTTCTTGACTCCAATCTTGTGAGCAGGGCAAGCTCTGGCAAGTTTACCAATATCTCTGTTAGAGGGGCTGGCATCAACCTGCCCCCTAACATACTGGCACCTTGTACTACACCAACAGAGGCTGGTTCTACCTAA 1194 0.4531 MLPELMNFLTACFQPRLDRYARSGSDAGGKQDGLLWYKDSGKHLNGEFSMAVVQANNLLEDQSYLESGSLSTSDSGPYGTFVGVYDGHGGPETSRYINEHLVRHLKRFAAEQQSMSVDVIRKAIQATEDGFMSLVAKQWSMKPQIAAVGSCCLIGVICNGTLYIANLGDSRAVLGRAVKATGEVLAMQLSAEHNAAIESVRHELQSLHPDDSNIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPIKRPILSSEPAISVHQLQPHDQFIIFASDGLWEHFTNQDAVDIVQNHPHNGIAKRLVKMALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSGKFTNISVRGAGINLPPNILAPCTTPTEAGST* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2953 397 Gene3D - 37 365 IPR036457 -
Lja1g2953 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
Lja1g2953 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Lja1g2953 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Lja1g2953 397 SMART PP2C_4 39 353 IPR001932 -
Lja1g2953 397 Pfam Protein phosphatase 2C 78 324 IPR001932 -
Lja1g2953 397 ProSiteProfiles PPM-type phosphatase domain profile. 66 355 IPR001932 -
Lja1g2953 397 CDD PP2Cc 48 355 IPR001932 -
Lja1g2953 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2953 Lja-Chr1 35878310 35885535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2953 1 396 PP2C-type Phosphatase Gene Family AT4G38520 75.000 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2953 - - jre:109006616 692.96