Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2947 ATGGCTTCCCCTTCTTCCCCCACCGACTCCAACCCACCTTCCGCCGTTCCCCTCCCTCTCCCGGCTCCTCCCCCACCCGCCACCTCCTCCCGCCGCCTCCCTCCTCCCTGCTGGGGCGACCCTGAAACCGCCGCCCTCATCGACGCCTACCGCGAGAAGTGGTACTCCCTCGGCCGCACCAACCTCAAATCCACCCACTGGCAGGAGGTTGCCGACACCGTGGCCGAACGCTGCCCTAACGCCTCCCTCCCGCCGAAAACCTCCGTCCAGTGCCGCCACAAGATGGAGAAGCTCCGTAAACGCTACAGATCTGAGATGCAGCGCCTCCGATCTCTCCCTGTGCCGCGCTCACGCGCCTCCTCGTCGTGGGTGCACTTCAAATCCATGGATTCCATGGAGAAAGGGCCATCGCCTCCGAAACCTGAACCTCTCTCCAACAACAACAACAACCACCTCGATGATCCTGAAGATCTCGACGACGACGAGATTTATGAAGAATTCAAAAACGGGGGTTCCAACACGAGGAGCCTTGACAAATTCTACCGCAACGGAATGGGTGGTAGCGGCGGCGGCGGCGGGTTTCGTATCCGGATCCCAACCGGGGTTAGCGTTGCGCAACCCGGATCGAAGCTTTTCGGGAACCAGAAGATGAACAACCCCTCCGATTCGGGTTCGCGAGGGTTTGCTAACGGCGGAAACAGGGGTGTGAAGGAGAGGCAATTCGGGTCGGGTAACAAGAGGGAGAGAGACCCGGTTGGGGAAATGGTGAGTGCGATCAAGGTTTTGCGAGATGGGTTCGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAAGGAGATCGAGCAAATGCGAATGGATATGGAGATGAAGCGCACTGAGATGATCCTGGAATCGCAGCAGAGGATCGTGGAGGCTTTCGCCAAAGCTGTTTCTGAGAAGCAGAAGAAGAAAAAGGGTAACCCGGTAGCATCACCCTCTGAACAATAG 987 0.5836 MASPSSPTDSNPPSAVPLPLPAPPPPATSSRRLPPPCWGDPETAALIDAYREKWYSLGRTNLKSTHWQEVADTVAERCPNASLPPKTSVQCRHKMEKLRKRYRSEMQRLRSLPVPRSRASSSWVHFKSMDSMEKGPSPPKPEPLSNNNNNHLDDPEDLDDDEIYEEFKNGGSNTRSLDKFYRNGMGGSGGGGGFRIRIPTGVSVAQPGSKLFGNQKMNNPSDSGSRGFANGGNRGVKERQFGSGNKRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAKEIEQMRMDMEMKRTEMILESQQRIVEAFAKAVSEKQKKKKGNPVASPSEQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2947 328 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 4 324 IPR044823 -
Lja1g2947 328 MobiDBLite consensus disorder prediction 10 32 - -
Lja1g2947 328 Pfam Myb/SANT-like DNA-binding domain 36 132 IPR044822 -
Lja1g2947 328 PANTHER TRANSCRIPTION FACTOR 4 324 - -
Lja1g2947 328 Gene3D - 38 104 - -
Lja1g2947 328 MobiDBLite consensus disorder prediction 211 228 - -
Lja1g2947 328 Coils Coil 92 112 - -
Lja1g2947 328 SMART 118neu2 45 137 IPR006578 -
Lja1g2947 328 MobiDBLite consensus disorder prediction 1 38 - -
Lja1g2947 328 MobiDBLite consensus disorder prediction 104 159 - -
Lja1g2947 328 MobiDBLite consensus disorder prediction 211 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2947 Lja-Chr1 35796280 35798087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2947 37 132 Trihelix Transcription Factor Family AT3G14180 36.458 8.91e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g2947 Myb_DNA-bind_4 1.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2947 - - cam:101501151 420.624