Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2945 ATGCCTCCAAGAATAGTGAAACGAGGTGCTGCGGCAAGGAAAGCGAAGGCTTCTTCAAAGGCTGCTTTGGAGAACCAGCGTCAGCAACAGGAACCTGAACCAGTTGAGGAAGTGGTTGTGAAGAACCATGAAGAGAACCCAGTTGTTGATGATGCTGTTGTGGAGGAGAAGCCAATTGATGCGGAGGACCAATTGGCCCCAGAGGGTGTGCCTGATGTGACAAACAATGCTGGGGAGGTTAAGGAGTCCATAGATGAATTTGAAAACGATGAACACTTGGATTTGGAGGATAATGATCCTGAGTATGGAGCTGAGGAGTATGGTGGAGTTGACTATGATGGGAAGGAAATTGAGCAAGATGAGGATCAGGAGGTGGGAGATGAAGTAGACGAAGAACCTGAAGAGTTTGTGGTTGAAGAAGAGGGAGATTCAGCTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGGTGATGATGAAGAGGAGGAGGTGGAGCATGCTGGTGAGGAGTCTGAGCATGAGCATCTGGGTGACGTGGAGGAAGAGGAACACCATGAAATTGTAAAAGAGAGGAAGAAGCGTAAGGAATTTGAAGTATTTGTTGGAGGCCTGGACAAGGCTGCTACTGAGCATGATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTTATTACTGAAGTCAGGCTGATGATGAATCCTCAAACTAAAAGGAACAAGGGATTTGCATTTTTGCGTTTTGAAACTGTTGAACAAGCAAAAAAAGCTCTGGTAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTGCTCCATGTCAGGATAGTGATACTCTCTATTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGAAGAAGTTGAAACATTATGGAGTTAAAAAATTTGAGAATTTGACTTTAGAAGAAGGTGGCGAAGAGGGAACGAACCGTGGATTTGCATTTTTGGAATTTTCAACTCGTTCAGATGCTAAGGAAGCCTGTAGGCTACTGCAGAAGAGAGATGTTATGTTTGGAGTCGATAAGCCAGCAAAGGTTTCCTTTGCAGACTCCTTTATTGACCCAAACGATGAAACTATGGAACAGGTTAAAACTGTATTTATTGATTCGCTGCCTCCTTCATGGGATGAAAATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAAATTGAGCTTGCCAAGGACATGCTAGCTGCTCGTAGGAAGGATTTTGGATTTGTTACGTTTGGTACACATGCTGCTGCTGTGGAATGTGCTGACAGCATTACCAGTAAATGGTTAGGGGACGGTGACAAAAAGGCAAAAGTACGGGCTAGATTGTCAAGACCGCTTCAGAGAAGCCGAGGAAGACATGCTGTTCGTGGGGATAGCCGCGCTGGCCGAATAACTGGAAGATTGGCAAGGCCTTTACGGAGTCGACCTGCACTACGTAATCTTCCTCCCCCCTCGGTGAGAAGAATTAGAAGTCGTGTTCCTCCAATTCGACCTTCTAGTCTGAGAGATAGACGCCCAGTTGCGTCCATGCCTGTAAGAGCTAGGCCTGTCGCTCCTCCAGCTAGATCTTATGACAGGAGATTTGCTGCACCTGCATATCCAAAAAGTAGCATGAAGAGATATCATGGTAGGCATGAAGATCTGCAACCTCAAAGAAGTAGAGTTTCTGCTGATTATGGATCTAGGATGGCCTCTCAAGGGCACCCATCTCTTAGAGAATATCCAGCCCATGGCTCTGACTACCCTGAGCTGCATAGAAATACATCTCGTGCTGCACCAGGGAGAGTTTATCCAGATGATGGCTATGGTCAGCGTCTTGAGAGGCATGCTCCTCCTCCTCCTCCCCATGTAAGCTACCATGAAGGACGCCCCCATGATTATGGCACATTATCAGGCTCGAAACGACCTTATACTGCTATAGATGATGTTCCTCCACGATATGCTGATGCTGATGCTCACCAATCAAGATCTCGTTTGGAGTATGACTACAGAGGTAGTGCTTCAAAATATGGAGACGCTTATGGTGATAGGCATGAAAGGTCTACTGTGGGATATAGTGGCAGTAGAAGTTCTATATCTATTCAAAACTCACATGGGACATATAGCAGCCGACAGGCAACCGGTTATGGTGGAGGTTCTTTCGGTGGTGGTGGCGGCGGTTTATATTCATCAAGTTATGGTGGTGATTACATACCTCGTGGAAGTGATGTTGGAGGCAGCACGTATTCATCAATATATTCTGGCAGGGGCGGCAGTGGTAGCAGTAGTTACATGGGTGGTGGAGGAACTAGGTCTTATTATTGA 2337 0.4536 MPPRIVKRGAAARKAKASSKAALENQRQQQEPEPVEEVVVKNHEENPVVDDAVVEEKPIDAEDQLAPEGVPDVTNNAGEVKESIDEFENDEHLDLEDNDPEYGAEEYGGVDYDGKEIEQDEDQEVGDEVDEEPEEFVVEEEGDSADEEVEYVYEEVEGDDEEEEVEHAGEESEHEHLGDVEEEEHHEIVKERKKRKEFEVFVGGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVINGKQCGVAPCQDSDTLYLGNICKTWKKEALKKKLKHYGVKKFENLTLEEGGEEGTNRGFAFLEFSTRSDAKEACRLLQKRDVMFGVDKPAKVSFADSFIDPNDETMEQVKTVFIDSLPPSWDENYVRDLLKKYGEIEKIELAKDMLAARRKDFGFVTFGTHAAAVECADSITSKWLGDGDKKAKVRARLSRPLQRSRGRHAVRGDSRAGRITGRLARPLRSRPALRNLPPPSVRRIRSRVPPIRPSSLRDRRPVASMPVRARPVAPPARSYDRRFAAPAYPKSSMKRYHGRHEDLQPQRSRVSADYGSRMASQGHPSLREYPAHGSDYPELHRNTSRAAPGRVYPDDGYGQRLERHAPPPPPHVSYHEGRPHDYGTLSGSKRPYTAIDDVPPRYADADAHQSRSRLEYDYRGSASKYGDAYGDRHERSTVGYSGSRSSISIQNSHGTYSSRQATGYGGGSFGGGGGGLYSSSYGGDYIPRGSDVGGSTYSSIYSGRGGSGSSSYMGGGGTRSYY* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2945 778 Gene3D - 279 360 IPR012677 -
Lja1g2945 778 CDD RRM_SF 376 450 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 683 713 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 89 106 - -
Lja1g2945 778 PANTHER RNA RECOGNITION MOTIF 1 778 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 455 534 - -
Lja1g2945 778 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 778 - -
Lja1g2945 778 SUPERFAMILY RNA-binding domain, RBD 367 471 IPR035979 GO:0003676
Lja1g2945 778 MobiDBLite consensus disorder prediction 115 168 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 169 184 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 695 713 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 1 51 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 30 51 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 550 665 - -
Lja1g2945 778 MobiDBLite consensus disorder prediction 88 184 - -
Lja1g2945 778 CDD RRM_SF 200 271 - -
Lja1g2945 778 Gene3D - 112 278 IPR012677 -
Lja1g2945 778 SUPERFAMILY RNA-binding domain, RBD 199 344 IPR035979 GO:0003676
Lja1g2945 778 SMART rrm1_1 199 272 IPR000504 GO:0003723
Lja1g2945 778 SMART rrm1_1 279 357 IPR000504 GO:0003723
Lja1g2945 778 SMART rrm1_1 375 450 IPR000504 GO:0003723
Lja1g2945 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 361 IPR000504 GO:0003723
Lja1g2945 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 456 IPR000504 GO:0003723
Lja1g2945 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 441 IPR000504 GO:0003723
Lja1g2945 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 346 IPR000504 GO:0003723
Lja1g2945 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 268 IPR000504 GO:0003723
Lja1g2945 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Lja1g2945 778 Gene3D - 363 481 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2945 Lja-Chr1 35774564 35780732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2945 187 422 Eukaryotic Initiation Factors Gene Family AT3G16380 26.894 4.48e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2945 - - gmx:100811387 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2945 1 35774564 35780732 Lja1g2945 1 35774564 35780732 ECH
Lja3g4587 3 87712435 87719078 Lja1g2945 1 35774564 35780732 PCT