Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2938 ATGGAGGGAGAGAGAGGTGTTCCCAATTATGAGCTTCAAGTTTCATTCACCAACACCCCACACAACATCCAAGAAATAGGTTTTGCTCACTTTGAAGAAAACCAAGTCCTTGGTTTCATGTCACCCTCTTCACAATCTCAATCTTCTCAGCTCTCTCATAATGAACTGGTCACCAAAACATCATGGAATCAACAAGACCAGGTGGGAACTCTGGATCCCAAGACTATAAGTGATGAAAATTGCACTGGAACTGTTTGTGATGGCAACAACAAGTCATGGTGGAGGAGTGCAGGTGCAGAGAAAGGCAAGGTGAAAATGAGGAGGAAGCTTAGAGAACCGAGGTTTTGTTTCCAAACAAGGAGTGACGTAGATGTGCTTGATGATGGATACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTCCATCCAAGAAGTTACTACCGCTGCACCCATAGCAACTGTAGGGTGAAGAAGAGGGTTGAACGACTTTCAGAGGATTGTCGTATGGTGATAACCACTTATGAAGGTAGACACAATCACATACCCTGCGACGACTCAAATTCATCCGACCAAGAATGCTTTACCTCTTTCTAA 603 0.4378 MEGERGVPNYELQVSFTNTPHNIQEIGFAHFEENQVLGFMSPSSQSQSSQLSHNELVTKTSWNQQDQVGTLDPKTISDENCTGTVCDGNNKSWWRSAGAEKGKVKMRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHIPCDDSNSSDQECFTSF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2938 200 ProSiteProfiles WRKY domain profile. 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2938 200 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 198 IPR044810 GO:0003700
Lja1g2938 200 Pfam WRKY DNA -binding domain 127 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2938 200 SMART WRKY_cls 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2938 200 SUPERFAMILY WRKY DNA-binding domain 118 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2938 200 Gene3D WRKY domain 113 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2938 200 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 15 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2938 Lja-Chr1 35686680 35694183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2938 3 200 WRKY Transcription Factor Family AT2G44745 60.465 1.00e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g2938 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2938 - - gmx:100800671 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2938 1 35686680 35694183 Lja1g2938 1 35686680 35694183 ECH
Lja3g4594 3 87791157 87796437 Lja1g2938 1 35686680 35694183 PCT