Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2934 ATGGTACAAATGCTGGTTTTGATTAATCAAGCACGCTCCCAAATCCAGATCATGTTTCTGTGTCTCCTTCTAACATTTTTGCTTCCCAAAGCAGCAGCTGAAGAGACTGAAGCAAATGCTCTATTGAAGTGGAAACAAAGCCTTGACAACCAAAGCCAAGCTCTCTTGTCAAATTGGACAGGTTCTGATCCATGCAAATGGAGAGGAATCCAGTGTGACAAATCCAGCTCCATCTCTAGCATAAGTCTGGAAAATTATGGACTAAAAGGTACACTCCACAATCTCAGTTTCTCCTCACTCCCCAACCTACTTACCCTAAATATCTATAACAACTCCTTTTCTGGGACCATCCCCCCACAAGTAGGTAACATGTCCAAATTAAATGTTTTGAACTTGTCTATAAATCCCTTTGATGGTTTCATTCCTCAAGAGATTTGGACATTAAGGACTCTACATGGCCTTGATCTTTCCCAATGTCAACTAGAGGGAGCTATTCCTAGCTCCATAGGAAACTTGTCCAAACTATCATATCTAGACTTTAGTACCAACAAGTTGTCTGGCCACATTCCTCCAGAGATTGGAAAATTGAAAAACTTGGAGTATCTTAGCATAGCAGACAATCAACTTTCTGGTCCCATTCCTAGAGAAATTGGGATGCTTACAAAAGTTAGTATTTTTGACCTCTCACTGAACCCTCTCTCTGGTCCTATCCCTGAAACAATAGGTAATATGAGCAGTTTAAATGAATTTTATCTTCGCAACACAACCCACTTGTCTGGAACAATCCCACCTTCCATAGGGAACCTGTCTAACCTGTCTTTGCTCTACCTTTACAACAATAATCTTTCTGGATCAATACCAGCTTCCATAGGAAACTTGGTCAATTTGAAAGAACTTTGGCTAAGTGACAACAAGCTTTCAGGGCCCATTCCATCCACCATTGGGAGCTTAACAAAGCTCACAGATTTGTTCTTGCGCTTTAATCGTCTTTCTGGACCGATTCCTGCCTCTATAGGGAACCTGATCAATTTGAATTCCCTGAGTCTCCAACAAAACAATCTCTCAGGAACTATTCCTACCACAATTGGTAATTTGAAAAATCTCTTCAAGTTGGAACTGTCCAGCAACAAACTCAATGGTAGCATTCTACAGAGCCTGAATAATTTAACCATCTTGGATACCTTGTTATTAGACAATAATGATTTCATTGGCCATTTGCCACCTGAAATCTGCTCTGGTGGGTTTCTAATGTACTTCATGGCTTTTAACAACCATTTTACTGGTCCAGTACCAAGAAGCTTGAAGAACTGCTCAAGTATTGTTAGACTCGCGATTGATAAAAATCAAATAGAAGGGGACATATCACAAGATTTTGGTGTGTATCCTGATGTGGAATTTGTTGACCTGAGTGACAATAAATTGTATGGCCCCATTTCACCTAAGTGGGGGAAGAACCTTAATCTTAACACCCTCAAGTTATCCAACAATAACATTTCTGGTGGCATACCAATAGAACTTGTTGGAGCAACCAAGCTTGGCAGGCTTGACCTTTCTTCAAACCACCTGACTGGGAATCTTCCAAAGGAGCTACGAAGCCTGGCACAATTATCTGAGCTCAAGATTAGTAACAATGACATTTCAGGAATAATTCCAGCAGAAATTGGATTGCTACAGATGCTTGAAACTTTGGATCTTGGAGGAAATGAATTGAGTGGCACAATACCAGAAAAAGTTATGATCTTACCCAGGTTGCTGAAGTTAAATTTGAGCATGAACAAAATTGAAGGAAACATTCCCTCACAGTTTACCAAAACTCTGATCTCTCTGGATCTTAGTGGCAATCTATTGAATGGAATGATACCACCAAGTCTGGGAAATTCGGAGGACTTGTTAATGTTGAATCTCTCACATAATAGTCTTTCCGGCACCATTCCTTCCACTTTCAGTAGAACACTGGATTTTGTTAACATATCAGACAACCAGTTAGAAGGGCCAATTCCAAACAGTCCAGCTTTTCTTAATGCTCCAATTGAATCATTTAAAAATAACAAAGGGCTGTGTGGTAATGTCAAAGGCCTCAGACGTTGCTCAAAGAGGAACAAAGTCATCATGTGGGTACTTCTTGCTGTGGGAATTGTAATACTAGTGTTGTGTGGGGTGGGGCTCTCAATGTATCTACTTTGTAGAAGTAAACCAAAGGAAGAAATTCAATCTGAAGAAGAACCTGAAAGGGTAGCACTCTTTTCCGTGTGGAGCTATGATGGAAAGATAATGTTTGAGAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGTGGGAGGTCAAGGAAACGTTTACAGGGCGTTGTTGCCAGCAGGTTTGGTTGTGGCTGTGAAGAAGCTTCATTCAGTGACAGATGAGGAAATGTCAAATTTCAGCTCAAAGGCTTTCATCAGCGAGATTCAAACCTTGACGGAAATTAGGCACCGGAATGTCATAAAGCTTCATGGGTTTTGCTTACACTCAAAGTTCTCATTCTTGGTTTATGAGTTCTTGGAAGGGGGAAGCTTGGATCAAGTGCTAAACAGTGACACACAAGCAGCAGCATTTGATTGGGAAAAGAGGGTGAATGTTGTGAAAGGTGTGGCCAACGCTTTGTCCTATATGCACCATGATTGTTCTCCTCCTATAATTCACCGCGACATATCAAGCAAGAATGTTCTTCTAGATCTTCAATATGAAGCTCATGTCTCTGATTTTGGAACAGCAAAGTTTCTGAAGCCTGGTTCACATACTTGGACCGCATTTGCAGGCACCTTTGGTTATGCAGCTCCAGAGCTCGCTCAGACAATGCAAGTGAATGAGAAATGTGATGTATATAGCTTTGGGGTGTTTGCTTTGGAAATCATCATGGGAATGCATCCAGGAGATCTTATTTCTTCATTGATGTCACCATCTACAGTACCAATGGTTAATGATTTGCTATTGATTGATATTTTAGATCAAAGACCTCATCAGGTTGAAAAACCAATTGATGAGGAGGTGATCTTGATTGCAAGTCTGGCACTTGCTTGCTTGAGGAAAAATCCACATTCTCGTCCAACTATGGATCAAGTATCCAAGGCTCTTGTATTAGGAAAGCCACCTTTGGCTTTGGGGTACCAGTTTCCTATGGTAAGAGTAGGACAACTCCACTAA 3192 0.407 MVQMLVLINQARSQIQIMFLCLLLTFLLPKAAAEETEANALLKWKQSLDNQSQALLSNWTGSDPCKWRGIQCDKSSSISSISLENYGLKGTLHNLSFSSLPNLLTLNIYNNSFSGTIPPQVGNMSKLNVLNLSINPFDGFIPQEIWTLRTLHGLDLSQCQLEGAIPSSIGNLSKLSYLDFSTNKLSGHIPPEIGKLKNLEYLSIADNQLSGPIPREIGMLTKVSIFDLSLNPLSGPIPETIGNMSSLNEFYLRNTTHLSGTIPPSIGNLSNLSLLYLYNNNLSGSIPASIGNLVNLKELWLSDNKLSGPIPSTIGSLTKLTDLFLRFNRLSGPIPASIGNLINLNSLSLQQNNLSGTIPTTIGNLKNLFKLELSSNKLNGSILQSLNNLTILDTLLLDNNDFIGHLPPEICSGGFLMYFMAFNNHFTGPVPRSLKNCSSIVRLAIDKNQIEGDISQDFGVYPDVEFVDLSDNKLYGPISPKWGKNLNLNTLKLSNNNISGGIPIELVGATKLGRLDLSSNHLTGNLPKELRSLAQLSELKISNNDISGIIPAEIGLLQMLETLDLGGNELSGTIPEKVMILPRLLKLNLSMNKIEGNIPSQFTKTLISLDLSGNLLNGMIPPSLGNSEDLLMLNLSHNSLSGTIPSTFSRTLDFVNISDNQLEGPIPNSPAFLNAPIESFKNNKGLCGNVKGLRRCSKRNKVIMWVLLAVGIVILVLCGVGLSMYLLCRSKPKEEIQSEEEPERVALFSVWSYDGKIMFENIIEATENFDDKYLIGVGGQGNVYRALLPAGLVVAVKKLHSVTDEEMSNFSSKAFISEIQTLTEIRHRNVIKLHGFCLHSKFSFLVYEFLEGGSLDQVLNSDTQAAAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDLQYEAHVSDFGTAKFLKPGSHTWTAFAGTFGYAAPELAQTMQVNEKCDVYSFGVFALEIIMGMHPGDLISSLMSPSTVPMVNDLLLIDILDQRPHQVEKPIDEEVILIASLALACLRKNPHSRPTMDQVSKALVLGKPPLALGYQFPMVRVGQLH* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2934 1063 SUPERFAMILY RNI-like 80 428 - -
Lja1g2934 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 177 250 - -
Lja1g2934 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 248 1062 - -
Lja1g2934 1063 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2934 1063 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515
Lja1g2934 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 20 176 - -
Lja1g2934 1063 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Lja1g2934 1063 Gene3D Ribonuclease Inhibitor 384 700 IPR032675 -
Lja1g2934 1063 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Lja1g2934 1063 Gene3D Ribonuclease Inhibitor 33 187 IPR032675 -
Lja1g2934 1063 Gene3D Transferase(Phosphotransferase) domain 1 850 1045 - -
Lja1g2934 1063 SUPERFAMILY Protein kinase-like (PK-like) 753 1041 IPR011009 -
Lja1g2934 1063 SMART LRR_sd22_2 317 343 - -
Lja1g2934 1063 SMART LRR_sd22_2 293 308 - -
Lja1g2934 1063 SMART LRR_sd22_2 365 388 - -
Lja1g2934 1063 SMART LRR_sd22_2 172 201 - -
Lja1g2934 1063 SMART LRR_typ_2 269 292 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 100 124 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 341 365 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 581 604 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 172 196 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 293 317 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 389 413 IPR003591 -
Lja1g2934 1063 SMART LRR_typ_2 533 557 IPR003591 -
Lja1g2934 1063 ProSitePatterns Tyrosine protein kinases specific active-site signature. 895 907 IPR008266 GO:0004672|GO:0006468
Lja1g2934 1063 Gene3D Phosphorylase Kinase; domain 1 730 849 - -
Lja1g2934 1063 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 176 - -
Lja1g2934 1063 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 177 250 - -
Lja1g2934 1063 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 248 1062 - -
Lja1g2934 1063 SUPERFAMILY L domain-like 423 688 - -
Lja1g2934 1063 Gene3D Ribonuclease Inhibitor 295 369 IPR032675 -
Lja1g2934 1063 ProSiteProfiles Protein kinase domain profile. 769 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2934 Lja-Chr1 35612379 35616036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2934 31 943 Receptor kinase-like Gene Family AT4G08850 45.998 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g2934 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2934 - - gmx:100814634 1288.48