Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2933 ATGGTACGCATGCTGGTTGTGATTCAAAGAAGCTCTCAAATCCAGTTCATGTTCTTCTGTGTCCTTCTAACACTTTTGCTTCCCCAAGATGCAGCTCAAGTGACTGAAGGAAGTGCTCTGTTGAAATGGAAACAGAGCCTTGACAACCAAAGCCAAGCTCTCTTGTCAACTTGGACAGGTTCTGATCCATGCAAATGGAAAGGAATTCAATGTGACAAATCCAACTCCATCTCCAACATAAGTCTTGCAAATTATGGACTCAAAGGTACACTCCACAATCTCAGCTTCTCCTCATTCCCCAACCTCCTCAGCCTAGATATCTCTAGCAACTTCTTTTTTGGGACCATCCCACCACAAGTAGGTGGCATGCCCAAAATAAATCTTTTGAACTTGTCTTACAATTCCTTTGATGGTTTAATTCCTCAAGAAATTTGGACATTAAGGAGTTTACATGTCCTTGATTTTTACGCTTGTCAACTAGAGGGTTCTATTCCAAGTTACATTACAAACTTGTCCAGCCTATCATATCTAGACTTGGGTGAAAACAAATTGTATGGTCACATTCCTTCTGAGATTGGAAAAATGAACAGCTTGGAGTACCTTGCCCTTGCAGAAAACAAGCTTTCTGGTTCCATTCCAAGTGAAATTGGGATGCTCACAAACCTTAGGTTTCTTGATCTTTCATTCAACCCTCTCTCTGGTACTATCCCTGAAACAATAGGTAACATGAGCAGTTTAAATAGACTTTATATTGCTAATATTTCCCAACTTTCTGGACCAATCCCACCTTCCTTATGGAACAGGTCTAACTTGTCCGAGCTCCAACTTTACCGCAACAATCTTTCTGGATCAATACCAGATTCCATAGGAAACTTGGTCAATTTGAAACAGCTTACGCTTGATTACAACCAATTTTCAGGGTCCATTCCTTCCACCATTGGGAGCTTGACAAAGCTCACAGACTTATACTTGAGCTTTAATCATTTTTCTGGACCAATTCCTGCCTCTATATGGAATCTTATCAATTTGAATCGCCTCAGTCTCCAAAGTAACAATCTCTCAGGAACTATTCCTACTACAATTGGTAATTTGAAAAGGCTCACTGTGTTGGAACTGTCCACCAACAAACTCAATGGTAGCATTCCACAGAGCCTGAATAGCATTACCAACTTGTATTCCTTGGTAATAGCAGAAAATGATTTCACTGGCCATTTGCCACCTCAAATCTGCTCTGGTGGGTCACTGGCATACTTCAATGCTTATGACAACCATTTTACAGGTCCAGTACCAACAAGCTTGAAGAACTGTTCAAGTCTTGTTAGGCTCCAGATTCAGAAAAACAAAATAGAAGGGGACATAGCACAAGATTTTGGTGTGTATCCTGATTTGGAATATGTTGATCTGAGTGACAATAAATTTCATGGCCCCATTTCACCTAAGTGGGGGAAGAGCCTTAATCTTAACACCCTAAAGTTATCCAACAATAACATTTCTGGTGGCATACCACTAGAACTTTTTGGAGCAACCAAGCTTGGCAGGCTTCACCTTTCTTCAAACCACTTGACTGGGAAGCTTCCAAAGGAGCTAGGAAGCCTGACACAATTAGCTGAGCTCAAGATTAGTGACAATTACATTTCAGGAAACATTCCAGCAGAAATTGGATCGCTACAAATGCTTGACACTTTGGATCTTGGAGGAAATGAATTGAGTGGCACAATACCAACAGAAGTTATGAGCTTACCCAGGTTGCGGAACTTGAATTTGAGCATGAACAAAATTGAAGGAAACATTCCCTCTCAGTTTGGAGAAGTTTTGATATCTCTTGATCTTAGTGGTAATCTGTTGAATGGAATAATACCACCAAGTCTGGGAGAGTTGAAGAACTTGTTAATGTTGAATCTCTCACATAATAGTCTTTCTGGCGCCATTCCTTCCACTTTTGATAGAACACTGGACTTTGTTAACGTATCAGACAACCATTTAGAAGGGCCAATTCCAAACGTTCGAGCTTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACAAAGGGTTGTGTGGTAATGTCACAGGCTTGAGACTTTGCTCCCCCGACCATGGTAGAAAAAGGAACAAAGTCATCATGTGGGTACTTCTTGCTGTGGGAATTGTAATACTAGTGTTGTGTGGGGTGGGACTCTCAATGTACCTACTTTGTAGAAGCAAACCAAAGGAAGAAATTCAATCTGTAGAAGAACCTGAAAGGGTAGGACTCTTTTCCATACAGAGCTATGATGGAAAAATAATGTTTGAAAATATCATTGCAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGTGGGAGGTCAAGGAAACGTTTACAGGGCGTTGTTGCCAGCAGGTTTGGTTGTGGCTGTGAAGAAGCTTCATTCAGTGACAGATGAGGAAATGTCAAATTTCAGCTCAAAGGCTTTCATCAGCGAGGTTCAAACCCTGACAGAAATTAGGCACCGGAACATCATAAAGCTTCTTGGATTTTGCTTACACTCACAGTTCTCATTCTTGGTTTATGAGTTCTTGGAAGGGGGAAGCTTGGATCAAGTGCTAAACAGTGACACACAAGCAGCAGCATTTGATTGGGAAAAGAGGGTGAATGTTGTGAAAGGAGTGGCCAATGCTTTGTCCTATATGCACCATGATTGCTCTCCTCCTATAATTCATCGCGACATATCAAGCAAGAATGTTCTTCTAGATCTTCGATATGAAGCTCATGTCTCTGACTTTGGAACAGCAAAGTTTCTGAAGCCTGGTTCACATACTTGGACTGCATTTGCAGGCACCTTTGGTTATGCAGCCCCAGAGTTAGCTCAAACAATGCAAGTGAATGAGAAATGTGATGTATATAGCTTTGGAGTATTTGCTTTGGAAATCATCATGGGAAAGCATCCAGGAGATCTCATTTCATCTTTGATGTCATCATCTACAGCACCAATGGCTAATAATTTGCTATTGATTGATGTTTTAGATCAAAGACTTCCCCAGCCTGAAAAATCAATTGATGGGGAGGTGATCTTGATTGCAAGTCTGGCACTTACTTGCTTGAGAGAAAATCCACATTATCGTCCAACTATGGATCAAGTATCTAAGGCTCTTGTATTAGGAAAGCCACCATCGGGGAACCAGTTTCCTGTGGTAAGAGTAGGAGAACTCCATTAA 3198 0.4081 MVRMLVVIQRSSQIQFMFFCVLLTLLLPQDAAQVTEGSALLKWKQSLDNQSQALLSTWTGSDPCKWKGIQCDKSNSISNISLANYGLKGTLHNLSFSSFPNLLSLDISSNFFFGTIPPQVGGMPKINLLNLSYNSFDGLIPQEIWTLRSLHVLDFYACQLEGSIPSYITNLSSLSYLDLGENKLYGHIPSEIGKMNSLEYLALAENKLSGSIPSEIGMLTNLRFLDLSFNPLSGTIPETIGNMSSLNRLYIANISQLSGPIPPSLWNRSNLSELQLYRNNLSGSIPDSIGNLVNLKQLTLDYNQFSGSIPSTIGSLTKLTDLYLSFNHFSGPIPASIWNLINLNRLSLQSNNLSGTIPTTIGNLKRLTVLELSTNKLNGSIPQSLNSITNLYSLVIAENDFTGHLPPQICSGGSLAYFNAYDNHFTGPVPTSLKNCSSLVRLQIQKNKIEGDIAQDFGVYPDLEYVDLSDNKFHGPISPKWGKSLNLNTLKLSNNNISGGIPLELFGATKLGRLHLSSNHLTGKLPKELGSLTQLAELKISDNYISGNIPAEIGSLQMLDTLDLGGNELSGTIPTEVMSLPRLRNLNLSMNKIEGNIPSQFGEVLISLDLSGNLLNGIIPPSLGELKNLLMLNLSHNSLSGAIPSTFDRTLDFVNVSDNHLEGPIPNVRAFLNASIESLKNNKGLCGNVTGLRLCSPDHGRKRNKVIMWVLLAVGIVILVLCGVGLSMYLLCRSKPKEEIQSVEEPERVGLFSIQSYDGKIMFENIIAATENFDDKYLIGVGGQGNVYRALLPAGLVVAVKKLHSVTDEEMSNFSSKAFISEVQTLTEIRHRNIIKLLGFCLHSQFSFLVYEFLEGGSLDQVLNSDTQAAAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDLRYEAHVSDFGTAKFLKPGSHTWTAFAGTFGYAAPELAQTMQVNEKCDVYSFGVFALEIIMGKHPGDLISSLMSSSTAPMANNLLLIDVLDQRLPQPEKSIDGEVILIASLALTCLRENPHYRPTMDQVSKALVLGKPPSGNQFPVVRVGELH* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2933 1065 SMART LRR_typ_2 532 556 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 580 604 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 219 243 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 171 195 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 340 364 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 99 123 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 292 316 IPR003591 -
Lja1g2933 1065 SMART LRR_typ_2 626 649 IPR003591 -
Lja1g2933 1065 Gene3D Ribonuclease Inhibitor 382 477 IPR032675 -
Lja1g2933 1065 Gene3D Ribonuclease Inhibitor 478 578 IPR032675 -
Lja1g2933 1065 Gene3D Ribonuclease Inhibitor 33 186 IPR032675 -
Lja1g2933 1065 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 247 1063 - -
Lja1g2933 1065 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 174 - -
Lja1g2933 1065 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 157 246 - -
Lja1g2933 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 174 - -
Lja1g2933 1065 ProSitePatterns Tyrosine protein kinases specific active-site signature. 899 911 IPR008266 GO:0004672|GO:0006468
Lja1g2933 1065 Gene3D Ribonuclease Inhibitor 187 285 IPR032675 -
Lja1g2933 1065 Gene3D Ribonuclease Inhibitor 286 381 IPR032675 -
Lja1g2933 1065 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Lja1g2933 1065 SUPERFAMILY RNI-like 79 402 - -
Lja1g2933 1065 ProSiteProfiles Protein kinase domain profile. 773 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2933 1065 SUPERFAMILY RNI-like 346 668 - -
Lja1g2933 1065 Gene3D Transferase(Phosphotransferase) domain 1 854 1049 - -
Lja1g2933 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 247 1063 - -
Lja1g2933 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 157 246 - -
Lja1g2933 1065 SUPERFAMILY Protein kinase-like (PK-like) 759 1045 IPR011009 -
Lja1g2933 1065 Gene3D Ribonuclease Inhibitor 583 687 IPR032675 -
Lja1g2933 1065 Gene3D Phosphorylase Kinase; domain 1 735 853 - -
Lja1g2933 1065 Pfam Protein kinase domain 775 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2933 1065 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Lja1g2933 1065 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Lja1g2933 1065 Pfam Leucine rich repeat 269 329 IPR001611 GO:0005515
Lja1g2933 1065 Pfam Leucine rich repeat 342 400 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2933 Lja-Chr1 35604458 35609008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2933 31 947 Receptor kinase-like Gene Family AT4G08850 44.979 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g2933 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2933 - - gmx:100814634 1352.04