Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2930 ATGGTACACATGCTTGTTGTGATTCAAAGAACCTCCCAAATTCAGTTCATGTTTCTGTATATCCTTCTAACACTTCTGCTTCCCCAAGCTGCAGCTGAAGAGAGTGAAGCAAATGCTCTGTTGAAATGGAAACAGAGCCTTGACAACCAAAGCCAAGCTCTCTTGTCAACTTGGACAGGTTCTGATCCATGCAAATGGAGAGGAATTCAGTGTGACAAATCCAGCTCAATCTCTAGAATAAGTCTTGCAAATTATGGACTAAAAGGTACACTTCACACTCTTAGTTTCTCCTCATTCCCCAATCTCAAAACCATAGACATCTTTGGCAACTCCTTTTATGGGACCATCCCACCACAAGTAGGTGACATGCCCAAAGTAAATATTTTGAACTTCTCTGAGAATTCATTTGATGGTTTCATCCCTCAAGAAATTTGGACACTAAGGACTCTATATGGCCTTGATCTTTCCATATGCAAACTAGAGGGAGCTATTCCTAGCTCCATAGAAAATTTGTCCAAACTAACATATCTAGACTTTGGTACCAATAAACTGTCTGGCCACATTCCTCCAGAGATTGGAAAATTGAACAACTTGGAGTATCTTGGCTTTGCAGAGAACACATTTTCAGGTCCCATTCCAAGAGAAATTGGAATGCTTACAAAACTTAGGTTTCTTGATCTGTCCAAAAACCCTCTCTCTGGTGCTATCCCTGAAACAATAGGTAACATGAGCAGTTTAAATAAACTTTATCTTGCCAACAATACCCTCTTGTCTGGACCACTCCCACCTTCCATAGGGAACCTGTCTAACTTGTCCTTTCTCCACCTCTATGGCAATAGTTTTTCTGGATCAATACCAGCTTCCATAGGAAACTTGGTCAACTTGAAAGAAATATTGCTATTTAGAAACCAACTTTCAGGGTCCATTCCTTCCACCATTGGGAGCTTGACAAAGCTCACAGACTTGTACTTGGGCTTTAACCATCTTTCTGGACCAATTCCTTCCTCTATAGGGAATATGATCAGTTTGAATTACCTCAGTCTCCAACAAAACAACCTCTCAGGAACTATTCCTACCACAATTGGTAATTTGACAGGGCTATTGGTCTTGGAACTGTCCACCAACAAACTCAATGGTAGCATTCCGCAGGTCCTGTATAACTTCACCAACTGGTTTTCCTTGTTATTAGGAGAAAATGATTTCACTGGCCATTTGCCACCTGAAATCTGCTCTGGTGGGTCACTAGCATACTTAAATGCTTTTGACAATCACTTTACAGGTCCAGTGCCAAGAAGCTTGAAGAACTGCTCAAGTATTATTAGGCTCAGGATTGAGAAAAATCAAATAGAAGGGGACATAGCACAAGATTTTGGTGTTTATCCTGATTTGGAAATCATTGATCTGAGTGACAATAAATTTTATGGCCCCATTTCACCAAAGTGGGGGAAGTGCCTTAATCTTAACACCCTCAAATTATCCAACAATAACCTTTCTGGTGGCATACCACTAGAACTTGTTGAAGCAACCAAGCTTGGCAGGCTTCATATTTCTTCAAACCACTTGACTGGGAAGCTTCCAAAGGAGCTAGGAAGCCTGACACAATTAGCCGAGCTCGAGATTAGCAACAATTATATTTCAGGAAACATTCCAGCAGAAATTGGATTGCTACAGATGCTTGACACTTTGGATCTTGGAGGAAATGAATTGAGAGGCACAATACCACAAGAAGTTATGAACTTACCTAGGTTGCGGAACTTGAATTTGAGTATGAACAAAATTGAAGGAAACATTCCGTCACAGTTTACCGAAGCTCTGGAATCTCTTGATCTTAGTGGCAATCTATTAAATGGAATAATACCACCAAATCTTGGAAAGTTGGAGAACTTGTTAATGTTGAATCTCTCACATAATAGTCTTTCCGGCACCATTCCCTCCACTTTTGGTAGAACACTGGATTTTGTTAACATATCAGACAACCAGTTAGAAGGGCCACTTCCAAATAGTCCAGCTTTTCTTAATGCTACAATGGAATCATTTAAAAACAACAAAGGGTTGTGTGGTAATGTCACTGGCTTGAGACTTTGCTCACCCAGCCATGGTCAGAAGTGGTACAAAGTCATCATGTGGGTACTTCTTGCTGTGGGAGTTGTAATACTAGTGTTGTGTGGGGTGGGGCTTTCAGTGTACCTACTATGTAGAAGTAAACCAAAGGAAGAAATTCAATCTGAAGAAGAACCTGAAAGGGTAGCACTATTTTCCATATGGGACTATGATGGAAAGATAATGTTTGAGAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGTGGGAGGTCAAGGAAATGTTTACATGGCGGAGTTGCCAGCGGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGTAACAGATGAGGAAATGTCAAATTTCAGTTCAAAGGCTTTCAACAGTGAGATTCAAACTTTGACAGAAATTAGACATAGGAACATTATAAAGCTTCATGGGTTTTGCTTACACTCAAAGTTCTCATTCTTGGTTTATGAGTTCTTGGAAGGGGGAAGCTTGGATCATGTGCTAAACAGTGACAAACAAGCAACAGCATTTGATTGGGAAAAGAGGGTGAATGTTGTGAAAGGTGTGGCCAATGCTTTGTCCTATATGCATCACGATTGTTCACCTCCTATAATTCATCGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTCAATATGAAGCTCATGTATCTGATTTTGGAACAGCAAAGTTTCTGAAGCCCGGTTCACATACTTGGACCGCATTCGCAGGCACCTTTGGTTATGCAGCACCGGAGTTAGCGCAGACAATGCAAGTGAATGAGAAATGTGATGTATATAGCTTTGGAGTATTTGCTTTGGAAATCATCATAGGAAAGCATCCAGGAGATCTCATTTCTTCATTGATGTCACCATCTACAGCACCAATGGTTAATGATTTGCTATTGATTGATGTTTTAGATCAAAGACCTCCTCAGCCTGAAAAACCAATTGATGGGGAGGTGATCTTGATTGCAAGTCTGGCACTTTCTTGCTTGAGAGAAAATCCACATTCGCGTCCAACTATGGATCAAGTATCTAAGGCTATTGTATTAGGAAAGCCACCTTTGGAGAACCAGTTTGCCATGGTAAGAGTAGGACAACTCCACTAA 3198 0.4046 MVHMLVVIQRTSQIQFMFLYILLTLLLPQAAAEESEANALLKWKQSLDNQSQALLSTWTGSDPCKWRGIQCDKSSSISRISLANYGLKGTLHTLSFSSFPNLKTIDIFGNSFYGTIPPQVGDMPKVNILNFSENSFDGFIPQEIWTLRTLYGLDLSICKLEGAIPSSIENLSKLTYLDFGTNKLSGHIPPEIGKLNNLEYLGFAENTFSGPIPREIGMLTKLRFLDLSKNPLSGAIPETIGNMSSLNKLYLANNTLLSGPLPPSIGNLSNLSFLHLYGNSFSGSIPASIGNLVNLKEILLFRNQLSGSIPSTIGSLTKLTDLYLGFNHLSGPIPSSIGNMISLNYLSLQQNNLSGTIPTTIGNLTGLLVLELSTNKLNGSIPQVLYNFTNWFSLLLGENDFTGHLPPEICSGGSLAYLNAFDNHFTGPVPRSLKNCSSIIRLRIEKNQIEGDIAQDFGVYPDLEIIDLSDNKFYGPISPKWGKCLNLNTLKLSNNNLSGGIPLELVEATKLGRLHISSNHLTGKLPKELGSLTQLAELEISNNYISGNIPAEIGLLQMLDTLDLGGNELRGTIPQEVMNLPRLRNLNLSMNKIEGNIPSQFTEALESLDLSGNLLNGIIPPNLGKLENLLMLNLSHNSLSGTIPSTFGRTLDFVNISDNQLEGPLPNSPAFLNATMESFKNNKGLCGNVTGLRLCSPSHGQKWYKVIMWVLLAVGVVILVLCGVGLSVYLLCRSKPKEEIQSEEEPERVALFSIWDYDGKIMFENIIEATENFDDKYLIGVGGQGNVYMAELPAGLVVAVKKLHSVTDEEMSNFSSKAFNSEIQTLTEIRHRNIIKLHGFCLHSKFSFLVYEFLEGGSLDHVLNSDKQATAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDLQYEAHVSDFGTAKFLKPGSHTWTAFAGTFGYAAPELAQTMQVNEKCDVYSFGVFALEIIIGKHPGDLISSLMSPSTAPMVNDLLLIDVLDQRPPQPEKPIDGEVILIASLALSCLRENPHSRPTMDQVSKAIVLGKPPLENQFAMVRVGQLH* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2930 1065 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 246 1064 - -
Lja1g2930 1065 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 159 246 - -
Lja1g2930 1065 ProSiteProfiles Protein kinase domain profile. 773 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2930 1065 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Lja1g2930 1065 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Lja1g2930 1065 Gene3D Ribonuclease Inhibitor 391 698 IPR032675 -
Lja1g2930 1065 SUPERFAMILY Protein kinase-like (PK-like) 759 1043 IPR011009 -
Lja1g2930 1065 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 19 176 - -
Lja1g2930 1065 Pfam Leucine Rich Repeat 221 242 IPR001611 GO:0005515
Lja1g2930 1065 Pfam Leucine Rich Repeat 605 626 IPR001611 GO:0005515
Lja1g2930 1065 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Lja1g2930 1065 SUPERFAMILY RNI-like 79 355 - -
Lja1g2930 1065 SMART LRR_typ_2 316 340 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 171 195 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 219 243 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 268 292 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 532 556 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 364 388 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 626 649 IPR003591 -
Lja1g2930 1065 SMART LRR_typ_2 580 604 IPR003591 -
Lja1g2930 1065 Gene3D Phosphorylase Kinase; domain 1 734 853 - -
Lja1g2930 1065 PRINTS Leucine-rich repeat signature 605 618 - -
Lja1g2930 1065 PRINTS Leucine-rich repeat signature 626 639 - -
Lja1g2930 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 159 246 - -
Lja1g2930 1065 ProSitePatterns Tyrosine protein kinases specific active-site signature. 899 911 IPR008266 GO:0004672|GO:0006468
Lja1g2930 1065 Gene3D Ribonuclease Inhibitor 284 390 IPR032675 -
Lja1g2930 1065 SUPERFAMILY RNI-like 346 705 - -
Lja1g2930 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 19 176 - -
Lja1g2930 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 246 1064 - -
Lja1g2930 1065 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Lja1g2930 1065 Gene3D Transferase(Phosphotransferase) domain 1 854 1049 - -
Lja1g2930 1065 Pfam Protein kinase domain 775 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2930 Lja-Chr1 35552584 35556166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2930 16 947 Receptor kinase-like Gene Family AT4G08850 44.795 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g2930 Pkinase 6.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2930 - - gmx:100815688 1375.92