Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2923 ATGGAGAGGGTTGCAGAGCCAAAGGCATTTCCTCGAACCTTGCCTGTCCTTGGTGAGGTATCTGATGCACAGGTAGCTGCAATGAGAGAAGCCGGTCAGAGACTAACTGGGCAGGATGTTTCAAGCGAACGTGGGATTTCAGCAAGAGATTTGAATCAGTTGTCAAGAGCACGGGGTGGCCCTATGACACGTCTGGCGTCCATCAGAGAAGTGGCTCAGTTGTCAAATGCGCGAACAGTTTTGGTAAGAGAAGATATGGGATTCGATACCCTCTCTTCTCAAGAGCATGTCTCCCCTGCACCCACTAGAACATGGAAAGGAAAGGCTTCTTTGCCCGACCCCGATGAACTTATGTCTGATGTTGAGACATTGAAGGGAAGTAATAATTCTTTCGAGGAAACTAGTTCGATTTCATTTGCTGGTGCTAGTCATCCCCCGGAACCTGTCGATACTGATCTTATGAGAACGGTTTATGTACCAATTGGTCAAAATAAATCTGAGGCTGGATGCTTAATGAAGAGCATGTCCTTGAAGGGTCCTTTCTTAGAAGATCTTTCAATTCGCGTTCCCTCGAAGAAACCAATCCCAGCTGTTGTTTCTCCTGCAGAAAGTGTGATTGACGAATCAAATGACATGGGGAACTTATCCTCACCTTTTTTAGGTGCTCGTGCTTCCCAGAATACTGAGAATTCTGAGGAGAAAGAATGTGTCTGGGATGCTTCTTTGCCTCCAAGTGGCAATGCCAGTCCACATAGTAGTATCGATAGTACTAGTGTTGTCAGAGCAATGAGCATTGCTAATAGTGTCGATAGTACTAGTGTTGTCAGAGCAATGAGCATTGCTAATAGTTGTGCAAGTACGTACAGGAGTGATGCAATGACTAGTGATGGCCTGCTTAGTTTAGACAGGAATTTTGATAGTACTAAAGGAAGTGTAAAGGGTGATTCACTTGAGAGTGCAAAAACTAGTGCTAGTCGAGCAAGTGATAGTAGTGGTCTCAGTGATGACAGCAACTGGAGTAACATCACTGGTAGTGCCAGTAAGCCCCACCAAGGAAATGATCCTAGGTGGAAGGCTATCATTGCAATCCGAGCTCGGGATGGAATTTTGGGAATGAGTCATTTTAGGTTACTCAAACGACTTGGTTGTGGCGATATTGGAAGTGTATACCTCTCAGAGCTGAGTGCAACGCGTTGTTATTTTGCAATGAAAGTTATGGACAAAGCATCCCTAGCAAGCAGAAAGAAGCTGATTAGGGCTCAGACAGAAAGGGAGATATTACAGTTGCTGGATCATCCATTTCTGCCTACATTGTACACTCATTTCGAGACGGACAGATTCTCCTGTTTGGTAATGGAATACTGCCCAGGGGGTGATCTACACACTTTAAGGCAACGGCAACCTGGGAAACATTTTTCAGAGTATGCTGCTCGCTTTTATGCTGCTGAGGTCCTGTTGGCAATTGAATATCTTCACATGCTTGGAGTTGTGTACCGAGACCTTAAACCTGAAAATGTACTGGTCCGAGATGACGGTCACATCATGCTCTCAGACTTCGATCTTTCTCTTAGATGCGCAGTTTCACCGACCCTGATCCGCACACATGATGGTGACCCCTCAAAACGCGCCGGCGGAAGCGCATTCTGTGTCCAGCCGGCTTGTATTGAGCCTTCTTCAGTATGCATCCAGCCTTCTTGTTTCATGCCTAAGCTCTTTGCTCAGAAGAATAATAAGAAGTCACGGAAGACTAGAGCCGAGTCTGGCCTGCTAGCCAACCTGCTTCCAGAGCTTGTTGCTGAGCCGACAGCGCGGTCCATGTCCTTTGTCGGCACACACGAATACCTTGCCCCTGAAATCATCAAAGGAGAAGGCCATGGTAGTGCAGTTGATTGGTGGACATTTGGGATTTTCTTGCATGAGCTGTTGTATGGTAAAACCCCTTTCAAAGGCTCAGGAAATCGCGCCACGCTGTTCAATGTAGTAGGCCAGCAGCTCAGGTTTCCTGAATCGCCCGCCACTAGTTATGCCGGCCGTGATCTGATCCGGGGCTTGCTGGTGAAGGAGCCACAGAACCGGCTCGGGATGAAGAGGGGCGCTACCGAGATCAAACAGCACCCTTTCTTTGAAGGTGTGAACTGGGCCTTGATCAGGTGCAGCACGCCGCCAGAAGTTCCAAGACCAGTTGAGAGTGATTTGCCAGCAAAGTTTGAAGCTGTAGATAACACTGTTGGGGTTGGCAACTACAATAGTAAGAGGATGGTAGGTAATAATGATATGATAAAATCTGGGGGAAATTATCTGGACTTTGAGTTCTTTTAG 2319 0.4696 MERVAEPKAFPRTLPVLGEVSDAQVAAMREAGQRLTGQDVSSERGISARDLNQLSRARGGPMTRLASIREVAQLSNARTVLVREDMGFDTLSSQEHVSPAPTRTWKGKASLPDPDELMSDVETLKGSNNSFEETSSISFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLMKSMSLKGPFLEDLSIRVPSKKPIPAVVSPAESVIDESNDMGNLSSPFLGARASQNTENSEEKECVWDASLPPSGNASPHSSIDSTSVVRAMSIANSVDSTSVVRAMSIANSCASTYRSDAMTSDGLLSLDRNFDSTKGSVKGDSLESAKTSASRASDSSGLSDDSNWSNITGSASKPHQGNDPRWKAIIAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSATRCYFAMKVMDKASLASRKKLIRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAIEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTHDGDPSKRAGGSAFCVQPACIEPSSVCIQPSCFMPKLFAQKNNKKSRKTRAESGLLANLLPELVAEPTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYAGRDLIRGLLVKEPQNRLGMKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVESDLPAKFEAVDNTVGVGNYNSKRMVGNNDMIKSGGNYLDFEFF* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2923 772 CDD STKc_phototropin_like 373 727 - -
Lja1g2923 772 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 69 269 - -
Lja1g2923 772 MobiDBLite consensus disorder prediction 226 254 - -
Lja1g2923 772 SUPERFAMILY Protein kinase-like (PK-like) 355 730 IPR011009 -
Lja1g2923 772 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 267 772 - -
Lja1g2923 772 MobiDBLite consensus disorder prediction 308 350 - -
Lja1g2923 772 SMART serkin_6 375 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2923 772 MobiDBLite consensus disorder prediction 308 353 - -
Lja1g2923 772 ProSiteProfiles Protein kinase domain profile. 375 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2923 772 Gene3D Phosphorylase Kinase; domain 1 373 458 - -
Lja1g2923 772 Gene3D Transferase(Phosphotransferase) domain 1 603 726 - -
Lja1g2923 772 PANTHER FLIPPASE KINASE 1-RELATED 69 269 - -
Lja1g2923 772 PANTHER FLIPPASE KINASE 1-RELATED 267 772 - -
Lja1g2923 772 Pfam Protein kinase domain 605 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2923 772 Pfam Protein kinase domain 376 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2923 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Lja1g2923 772 Gene3D Transferase(Phosphotransferase) domain 1 459 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2923 Lja-Chr1 35397496 35404132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2923 1 772 AGC Kinase Gene Family AT2G44830 64.625 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja1g2923 Pkinase 2.4e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2923 1 35397496 35404132 Lja1g2923 1 35397496 35404132 ECH
Lja3g4609 3 87989190 87993559 Lja1g2923 1 35397496 35404132 PCT