Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2918 ATGTCATCCACCACCATGGATTCAGATCAGTTTGCATCTCTAGAACATATTCAACAATACCTCTTTCTTGACAACGATTCAAGCCCTATGACCTCACCTCAAGCTATTGAAAGCCCTAGTTCTGATCCAAATGCGCTCTCTTTCGACAAGCCCGATGCGGCAGAGCGTGAGCCTAACGCGCCTCCGGCATGGAGGCACTACAGAGGCGTGAGGCGCAGGCCGTGGGGTAAGTTTGCGGCAGAGACCAGAGATCCAAAGAAGAACGGTGCTAGGGTTTGGCTTGGAACTTATGTGACTGAGGAGGAAGCAGCTATAGCTTACGATAAAGCTGCTTTCAAGATGCGTGGCCGGAAGGCCAAGCTGAACTTCCCCCACCTCATCTGCTCTTCTGAGCCGGTGAGGGAGGTGGTTGTGAAGCGGTGCTCACCAGAGCCAACAGAGCTTTCTCCACCGGTGTCACCTTTATCGGAGGATAGTTGTGAGTCACAAGGGTCAAAGAAGAGAAGGACCATGGTTGATCTGCTAAATAAGTTAGCCAAGAATAGAGGTCAAGTCAAGGCATTTGAAATGGCCTCGCAGGAAAATGTTGTTGAACAATGGGTGAACGAGTTGAGTGATTGTAGTGTTTTTTAG 633 0.4976 MSSTTMDSDQFASLEHIQQYLFLDNDSSPMTSPQAIESPSSDPNALSFDKPDAAEREPNAPPAWRHYRGVRRRPWGKFAAETRDPKKNGARVWLGTYVTEEEAAIAYDKAAFKMRGRKAKLNFPHLICSSEPVREVVVKRCSPEPTELSPPVSPLSEDSCESQGSKKRRTMVDLLNKLAKNRGQVKAFEMASQENVVEQWVNELSDCSVF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2918 210 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 184 - -
Lja1g2918 210 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Lja1g2918 210 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Lja1g2918 210 MobiDBLite consensus disorder prediction 24 45 - -
Lja1g2918 210 MobiDBLite consensus disorder prediction 24 62 - -
Lja1g2918 210 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Lja1g2918 210 MobiDBLite consensus disorder prediction 143 167 - -
Lja1g2918 210 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Lja1g2918 210 CDD AP2 66 126 IPR001471 GO:0003700|GO:0006355
Lja1g2918 210 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Lja1g2918 210 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Lja1g2918 210 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Lja1g2918 210 PANTHER DNA-BINDING DOMAIN 1 184 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2918 Lja-Chr1 35311547 35312461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2918 57 146 AP2-EREBP Transcription Factor Family AT2G44840 64.423 2.42e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g2918 AP2 9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2918 K09286 - gmx:102663872 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2918 1 35311547 35312461 Lja1g2918 1 35311547 35312461 ECH
Lja3g4615 3 88135733 88136729 Lja1g2918 1 35311547 35312461 PCT