Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2911 ATGAGTCGTAGAGTGAGGAGGAAGGTGGCAAAGAAAGGCAAAGGGAATGAGGTGGTGTCCATTCCTGAAATTCAAGGAGAGGTTTTGGATTTGGAAAGCCAAGGAATTGTTGAGTGGAGGGGCTTACCTGATGATACAGTGATTCAGCTGTTGTCATGTTTGAGCTATCGAGACCGAGCTAGCTTTTCATCAAGTTGTAGGACATGGAGGTCTCTTGGTAGCTCCCCATGTTTGTGGACTTCTCTTGATCTTCGTTCCCACAAGTTTGATCCCAGCACGGCATCTTCACTTGCTTCAAGATGTGTGCATCTTCAAAAGCTTAGGTTTCGCGGGGCGGAGTCCGCTGACGCTATTATTCATCTTCGAGCTGGGAACTTGCGTGAATTAAGCGGCGACTATTGCAGGAAGATTACTGATGCTACTCTTTCAGTGATTGCGGCTCGGCATGAGTTACTTGAGAGTCTTCAGCTTGGACCTGATTTCTGTGAGAGAATAAGTAGCGATGCTATTAGAGCTATAGCTCATTGCTGTCCTAGATTGAACAAACTTAGGCTCTCTGGCATTAGGGATGTAAATGCGGATGCTATTAATGCCTTGGCTAATCATTGTCCTAAGTTGACTGATATTGGGTTCATTGACTGCCTTAACGTTGATGAGGTTGCTTTGGGAAATGTGTCGACAATTCGTTTCCTTTCTGTTGCCGGGATGTCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGGTTGGGTTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTTTAAGATTGTTATCCTCATCACAGAGTTTGAGGGTTTTGATTGCTCTGAATTGTCCTATCCTTGAAGAAGACACTAGCTTCTGTGCTACTAAGTATAAAAACAAGTTACTAATTTCCGTTTCTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGATAATACCAAGAGTGGAAAGAATGTGTTTTTGGACTGGAGGAATTTGAAGAATAATGATAAGGACCTTAATGAAATTATACCCTGGCTTGAATGGATGCTATCCCATACGCTTTTGCGTTCTGCTGAGACCCCTCAACAGGGTCTTGATAATTTTTGGATTGAACAAGGTGGGTTGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAAAGGGCAGCCACGGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAATTATGCGAGAGGGTGGCATACGCCTCCTTCTTGGCCTGGCAAAATCTTGGAGGGAAGGACTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCCGTCAATGCCAATGTCGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTCGCTAGTTTGGCCAGGTCAACAAACAAATTGGTGGCTGAAGAGGCTGCTGGAGGGTTATGGAATCTCTCTGTTGGAGAGGAGCACAAGGGCGCCATTGCTGAGGCTGGTGGAATAAAAGCTTTAGTGGAACTTATATTCAAGTGGTCTTCTAGTGGAGATGGAGTTTTAGAACGTGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGCACAGAGGTTGCACTGGCTGGAGGTGTACATGCTCTAGTAATGCTTGCTCGTAAGTGCCAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGCGCATTGGCTAATTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTGGGAAGAGAAGCAGGTGCTCTTGAGGCACTTGTTCAACTTACGCGTTCTCCCCATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAGTCCATTGCAGCAGCTGGTGGAGTTCAGGCACTGGTTGCTCTAGCCCAATCTTGTTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGAGCTCTCTGGGGACTGTCAGTTTCTGAAGTCAATAGCATTGCCATTGGACAAGAAGGAGGTGTTGCACCTCTGATTGCACTGGCACGGTCTGAAGCAGAGGACGTTCATGAAACTGCTGCTGGAGCACTATGGAATCTTGCTTACAACCCTGGTAATGCTCTACGAATAGTGGAGGAAGGTGGAGTAACTGCCCTTGTCGATCTCTGTTCTACATCAGTATCGAAAATGGCACGATTTATGGCTGCATTGGCATTGTCTTATATGTTCGATGGGAGAATGGACGAATTTGCTTTAGCAGGCCTAATGTCGGAAAGTATTTCTAAGATAGCTGCGAGCTTGGATGGAGCTAGAAAGATGGCTTTGAAACATATTGAAACATTTGTCCATATGTTCTCTAACCAACAAGCATTTGCGGCTGCTGCTGCATCATCAGCGCCTGCAGCACTAGCACAAGTTACTGATGGTGCTCGTATTCAAGAAGCTGGACATCTAAGATGCAGTGGTTCTGAAATTGGAAGATTTGTTACTATGCTCCGAAATCCATCACCTATACTGAAATCTTGTGCAGCATTTGCTCTTCTCCAGTTCACAATCCCTGGTGGACGACATGCTGGGCACCATGCTAGCCTCATGCAGAATGCAGGTGCAGCAAGAGTTCTGCGTGGTGCAGCCGCTGCAGCGACTGCGCCACTTGAAGCGAAAATCTTCGCCAGAATTGTTCTTCGCAATCTTGAGTATCACCAGATAGAACATACAAAGTAG 2757 0.4574 MSRRVRRKVAKKGKGNEVVSIPEIQGEVLDLESQGIVEWRGLPDDTVIQLLSCLSYRDRASFSSSCRTWRSLGSSPCLWTSLDLRSHKFDPSTASSLASRCVHLQKLRFRGAESADAIIHLRAGNLRELSGDYCRKITDATLSVIAARHELLESLQLGPDFCERISSDAIRAIAHCCPRLNKLRLSGIRDVNADAINALANHCPKLTDIGFIDCLNVDEVALGNVSTIRFLSVAGMSSMKWGVVSHLWHKLPNLVGLDVSRTDIGPSAVLRLLSSSQSLRVLIALNCPILEEDTSFCATKYKNKLLISVSTDIFKGLASLFFDNTKSGKNVFLDWRNLKNNDKDLNEIIPWLEWMLSHTLLRSAETPQQGLDNFWIEQGGLLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAIMREGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILASLARSTNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVELIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCQFEGVQEQAARALANLAAHGDSNSNNAAVGREAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRESIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEVNSIAIGQEGGVAPLIALARSEAEDVHETAAGALWNLAYNPGNALRIVEEGGVTALVDLCSTSVSKMARFMAALALSYMFDGRMDEFALAGLMSESISKIAASLDGARKMALKHIETFVHMFSNQQAFAAAAASSAPAALAQVTDGARIQEAGHLRCSGSEIGRFVTMLRNPSPILKSCAAFALLQFTIPGGRHAGHHASLMQNAGAARVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEHTK* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2911 918 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Lja1g2911 918 Gene3D - 679 916 IPR011989 -
Lja1g2911 918 Gene3D Ribonuclease Inhibitor 32 311 IPR032675 -
Lja1g2911 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Lja1g2911 918 PANTHER PROTEIN ARABIDILLO 1-LIKE 1 913 - -
Lja1g2911 918 SMART LRR_CC_2 251 275 IPR006553 -
Lja1g2911 918 SMART LRR_CC_2 177 202 IPR006553 -
Lja1g2911 918 SMART LRR_CC_2 123 148 IPR006553 -
Lja1g2911 918 SMART LRR_CC_2 149 176 IPR006553 -
Lja1g2911 918 SMART LRR_CC_2 203 228 IPR006553 -
Lja1g2911 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Lja1g2911 918 PANTHER PROTEIN ARABIDILLO 1 1 913 IPR044583 -
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 462 496 IPR000225 GO:0005515
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 589 627 IPR000225 GO:0005515
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 629 671 IPR000225 GO:0005515
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 499 541 IPR000225 GO:0005515
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 675 712 IPR000225 GO:0005515
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 421 455 IPR000225 GO:0005515
Lja1g2911 918 Pfam Armadillo/beta-catenin-like repeat 552 583 IPR000225 GO:0005515
Lja1g2911 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 726 IPR000225 GO:0005515
Lja1g2911 918 SUPERFAMILY RNI-like 61 292 - -
Lja1g2911 918 SMART fbox_2 42 82 IPR001810 GO:0005515
Lja1g2911 918 SUPERFAMILY ARM repeat 359 744 IPR016024 -
Lja1g2911 918 Gene3D - 382 502 IPR011989 -
Lja1g2911 918 Gene3D - 503 589 IPR011989 -
Lja1g2911 918 Gene3D - 590 678 IPR011989 -
Lja1g2911 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 629 672 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 416 456 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 542 583 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 588 628 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 498 541 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 714 755 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 673 713 IPR000225 GO:0005515
Lja1g2911 918 SMART arm_5 457 497 IPR000225 GO:0005515
Lja1g2911 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 554 IPR000225 GO:0005515
Lja1g2911 918 Pfam F-box-like 40 85 IPR001810 GO:0005515
Lja1g2911 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 685 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2911 570 757 U-box Gene Family AT2G23140 35.450 2.67e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2911 - - ccaj:109792060 1509.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2911 1 35196753 35214867 Lja1g2911 1 35196753 35214867 ECH