Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2905 ATGGGGGAACTATGGTCACAACTAGGCTCCTTAATAGCCACCACCATGTTTGTGTACGCCATGGTTGAGCGTTTTTTCCCTGCTGCACTACGTGACAGTCTTCAATTACAGACACAAAAAATGGTGAACCTTTTCTACCCTTATATCCAAATCACCTTCCCTGAATTCTCAGGTGAGAGGCTCAAGAGGAGTGAAGCTTACACTGCAATCCAAACATACCTCAGTGAAAACTCTTCCCAACTAGCCAAAAGGCTCAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCATTGGTTCTCAGCGTAGATGATGATGAAGAGGTGACAGATGAGTTCCAAGGTGTTAAGCTATGGTGGGCTGCAAGCAAAATCGCCACAAACCCGCAAGCTTATTCCTTCTCTTATTACACTCCCCTTGATGGGAAAAGATTCTACAAGCTCACTTTCCACAAGCAACACAGAGATCTCATCACTGTGTCTTACATCAAACATGTCCTGCAACAAGGGAAGGAAATTGCCTTGAGAAATAGGCAGAGGAAGCTTTACACCAACAATCCAAGCAGTGGTTGGTATGGTTACAAGCAATCAAAGTGGAGCCACATAGTTTTTGAGCACCCTGCAACTTTTGAGACACTTGCACTGGAGAAGAACAAGAAGGAGGAGATCATCAATGACCTTGTTAGGTTCAGAAATGGAAAAGACTACTATGCGAAAATTGGCAAGGCTTGGAAGCGTGGCTATTTACTCTTCGGTCCTCCGGGGACCGGTAAGTCTACCATGATTGCCGCCATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAATTGACTGCAGTTAAGGACAACACTGAGCTGAGGAAGCTCTTGATTGAAACTTCTAGCAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCTCTTGATCTCACTGGTCAGAGGAAGATGATGAAGAAGGAGAAAAATGAGGAAGAAGAACCAAAAGAGTTATATCCTGGTAGAAAAAATGAAGAAGAGAATAGCAAAAGTAGTAAAGTAACTCTGTCTGGTTTATTGAATTTTATTGATGGTATTTGGTCAGCATGTGGAGGAGAAAGGATCATCATTTTCACAACAAACTTTATAGAGAAACTTGATCCTGCTCTTATTAGGACAGGAAGGATGGATAAACACATTGAATTGTCCTATTGTTGCTATGAAGCATTCAAGGTACTTGCTAAGAACTACTTGGATGTTGACTCACACTATTTGTTTGCTAGAATTGCAAATTTGTTGGAAGTTACCAATATGACACCTGCTGATGTTGCTGAGAATCTGATATCTAAATCATTGAATGAAAATGTGGAGACTTGCTTGCTGACTTTGATTCAAGTTCTTGAGATGAAAATGGTAGAAGGAGAAACAGGGTTAAAGGAAGAAAAAAACAAGCAAGATCCTACTCAAAAGGGGATGAAAAATAATGCACAAACTGTGGAAGATGTGAAGGAAAATGGCTTCATTCATTGA 1503 0.4092 MGELWSQLGSLIATTMFVYAMVERFFPAALRDSLQLQTQKMVNLFYPYIQITFPEFSGERLKRSEAYTAIQTYLSENSSQLAKRLKAEVVKDSQNPLVLSVDDDEEVTDEFQGVKLWWAASKIATNPQAYSFSYYTPLDGKRFYKLTFHKQHRDLITVSYIKHVLQQGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLALEKNKKEEIINDLVRFRNGKDYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRKMMKKEKNEEEEPKELYPGRKNEEENSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNFIEKLDPALIRTGRMDKHIELSYCCYEAFKVLAKNYLDVDSHYLFARIANLLEVTNMTPADVAENLISKSLNENVETCLLTLIQVLEMKMVEGETGLKEEKNKQDPTQKGMKNNAQTVEDVKENGFIH* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2905 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 441 IPR027417 -
Lja1g2905 500 MobiDBLite consensus disorder prediction 315 341 - -
Lja1g2905 500 SMART AAA_5 242 397 IPR003593 -
Lja1g2905 500 Pfam ATPase family associated with various cellular activities (AAA) 247 394 IPR003959 GO:0005524|GO:0016887
Lja1g2905 500 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 481 - -
Lja1g2905 500 CDD AAA 243 395 - -
Lja1g2905 500 PANTHER BCS1 AAA-TYPE ATPASE 3 481 - -
Lja1g2905 500 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Lja1g2905 500 MobiDBLite consensus disorder prediction 468 488 - -
Lja1g2905 500 Gene3D - 392 463 - -
Lja1g2905 500 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Lja1g2905 500 Gene3D - 196 391 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2905 Lja-Chr1 35148806 35150419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2905 207 442 Miscellaneous Gene Families AT5G58870 27.600 1.17e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2905 - - gmx:100777731 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2905 1 35148806 35150419 Lja1g2905 1 35148806 35150419 ECH
Lja2g1657 2 16518768 16559819 Lja1g2905 1 35148806 35150419 PCT
Lja1g2905 1 35148806 35150419 Lja2g1656 2 16516417 16517913 PCT