Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2898 ATGTATTTTTTTCAGGCTGCATTTGCCGGAGACGATGCTCCACGTGCTGTGTTTCCTAGCATTCTGGGCGCTCGTCGCAGTGGCGTGATGCATGGCCAAGGCAACAAAGATTATTATGTCGGTGATGAGGCACAGTCTAGGTGTGGAACTCTGAACATCAAGTATCCCATGGAAAAGGGAATCGTAACCGATTGGGATGCCATGGAAAGGGTTTTGCATCATACCTTGTATGAGGAGCTTCATGTTGCCCCAGAAGAGCATCCAGTTCTACTAAGTGATGCTCCTCTTAACCCCAAGGCTAATCGTGAGAAAATGGCCCAAGTCATGTTTGAAACTTTTAATACCCCAGCTTTGTGTGTATCAATTGGAGCTTATCTTGCACTACTTGCAAGTGGTCGTGTGACTGGAATTGTGTTGGACTCGGGTCACGGTGTCACCTGCGCTGTCCCTATCTACGAGAATTATGTCTTCAAAGAAGCCATCCATCGTGGCGACGTGGCGGGTGGTGACCTCACGGATTTCTTGAAGGAGGCTTTGACAGAGCGAGGGTATGATAATTTAACCTCCTCAGCTGCTGACCGTGAAATTGTAAGGGAGATGAAAGAAAAGCTGGCTTACGTTGCGCTTGACTATGAGCAAGAAATGGAGAAAGCTAAGAACAATCCTTCTTCTGTGGAGAAGCACTACGAGTTGCCTGATGGGCAGGAAATCATCACCGTTGGCAGCGAGCGTTTCAGATGTCCGGAAGTCCTATTCCAACCATCCATGATAAGGCGTGACCCTTTGGCAAAAACTGGAATTCATGAAATGATAAATGAATCCATAAGGAAATGTGATGATGAAGAGGTTAGGAAACATCTATATGGCAATATTGTCCTATCAGGAGGATCAACCTTGTTCCCAGGAATTGCTGATAGATTGACCAAAGAAATTTCTGCATTAGCCCCTAGGGGCATGAAGATCAAAGTGATAGCACCACCTGAGAGGATATACATGGTCTGGATTGGTGGTTCTGTATTGGCGTCACTCTCCTCCTGCCAACAGATGTGGATTACAAAGGCAGAATATGATGATTGTGGGCCATCAATCGTGCATAAAGATAAAGATAATCTGTTTGGGAATAAGTCAGGGGTTTCCAATTTAGGCGAAACTGGAAGAATTGTAACAGGAACATTGCGATTGGGATTGGAATCAGCAGAGCGACACTTTCGACCTTCCCAATCAGCGGTGAAAGATGCGGTCAAATTCGCTGTCGATGCCCATGACACGGAGTCTGTAGGGAAGAATTTTGAGGGCAATGAGCTTGAGGAATTAGGCGCATATGAGAAGGGTCGCCTTCAAAATCAACTTCTCACATGTTCTGCAAAACACTTACTGCCTTTGATACCATCACTCACAGGGGATTTTCTGTTCCTCGTAGAGCTGCTGAGGACTGTCTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCGAAAGACCTGCATGGTGTGGAGTGGAAATTTTGTCATATTTATAGAGGTTAACCAAGTGTCTTTTCTAAGGGGCGAAAATGGAGAACTGAGATTGGGAATCAGAAGATCTGTTGGGCCTAGAAATGGTCTTCCTGAATCAACTGTTGGTAATCAGAACAGTTATCCCCATATCCTATCTGTTGTGGCAAATGTTATATCCACCAGAAGCATGTTCCATGTTTTCTACAGTCCAAGAGCAAGTAATTCAGATTTTGTTTTTCCCTACCAAAAATATGCTAAAAGCATACAACAGCGGTTACAACCGCTACTATTTCTATCAAAAGGCAGCGGTTACAACTGCTACGGATCTAATCTACAAAAAGTGGTCCAACCACATAAGAAAAGAGGCGATGGTGTATCAGCACCAATCAGATTCATGGCCTTACGAAGGAGCTTTCAAACTCCTCCACAGTGCTCTAGCGCTTGCCTCCAAGAGCCTAGCCATACCTCTCCACCATCCAAGAGCCTCCCAAATGTTTTGAATGGCAAAAGATCCTTCTCCACCATCCAATGCCCCCGTAAATCAGCGCTGTTGCAGCCAAATCAACCTAATAATATAAAAATGCATGATATGAGACCTAAATGCATAAAAATGACTAAAATATCATAA 2136 0.4462 MYFFQAAFAGDDAPRAVFPSILGARRSGVMHGQGNKDYYVGDEAQSRCGTLNIKYPMEKGIVTDWDAMERVLHHTLYEELHVAPEEHPVLLSDAPLNPKANREKMAQVMFETFNTPALCVSIGAYLALLASGRVTGIVLDSGHGVTCAVPIYENYVFKEAIHRGDVAGGDLTDFLKEALTERGYDNLTSSAADREIVREMKEKLAYVALDYEQEMEKAKNNPSSVEKHYELPDGQEIITVGSERFRCPEVLFQPSMIRRDPLAKTGIHEMINESIRKCDDEEVRKHLYGNIVLSGGSTLFPGIADRLTKEISALAPRGMKIKVIAPPERIYMVWIGGSVLASLSSCQQMWITKAEYDDCGPSIVHKDKDNLFGNKSGVSNLGETGRIVTGTLRLGLESAERHFRPSQSAVKDAVKFAVDAHDTESVGKNFEGNELEELGAYEKGRLQNQLLTCSAKHLLPLIPSLTGDFLFLVELLRTVFLLWIISSRDPLKSLLRKTCMVWSGNFVIFIEVNQVSFLRGENGELRLGIRRSVGPRNGLPESTVGNQNSYPHILSVVANVISTRSMFHVFYSPRASNSDFVFPYQKYAKSIQQRLQPLLFLSKGSGYNCYGSNLQKVVQPHKKRGDGVSAPIRFMALRRSFQTPPQCSSACLQEPSHTSPPSKSLPNVLNGKRSFSTIQCPRKSALLQPNQPNNIKMHDMRPKCIKMTKIS* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2898 711 ProSitePatterns Actins signature 2. 350 358 IPR004001 -
Lja1g2898 711 Gene3D - 2 363 - -
Lja1g2898 711 Gene3D - 124 332 - -
Lja1g2898 711 SUPERFAMILY Actin-like ATPase domain 133 366 IPR043129 -
Lja1g2898 711 SUPERFAMILY Actin-like ATPase domain 2 139 IPR043129 -
Lja1g2898 711 Pfam Auxin response factor 558 595 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g2898 711 PANTHER ACTIN-97 5 364 - -
Lja1g2898 711 PANTHER ACTIN 5 364 IPR004000 -
Lja1g2898 711 MobiDBLite consensus disorder prediction 648 668 - -
Lja1g2898 711 SMART actin_3 2 369 IPR004000 -
Lja1g2898 711 Coils Coil 201 221 - -
Lja1g2898 711 PRINTS Actin signature 126 145 IPR004000 -
Lja1g2898 711 PRINTS Actin signature 225 241 IPR004000 -
Lja1g2898 711 PRINTS Actin signature 35 46 IPR004000 -
Lja1g2898 711 PRINTS Actin signature 47 69 IPR004000 -
Lja1g2898 711 PRINTS Actin signature 13 22 IPR004000 -
Lja1g2898 711 PRINTS Actin signature 101 114 IPR004000 -
Lja1g2898 711 CDD NBD_sugar-kinase_HSP70_actin 58 167 - -
Lja1g2898 711 Pfam Actin 4 366 IPR004000 -
Lja1g2898 711 Gene3D Actin; Chain A, domain 4 166 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2898 Lja-Chr1 35052147 35059655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2898 3 366 Cytoskeleton Gene Families AT3G12110 69.041 2.54e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2898 K10355 - qsu:112005444 489.189