Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2897 ATGGTGTTTAGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGAATGAAGAATGATGATGCTGAGGAGGAGATTGAATGTTGTGTTCAATTTAGTTTCATTAGAAGTTGCATACCTTCAAGATCAAAGGTTAATAGCTCCATAGGTAGCACCAGTACTCACTATGTGGATAAGAAACCTGCAGCTGAGGAAAACAAAAAGGAAACAAGTGCTCCTCCAGGGTCCTCTACAACAAGTAATGCAGAAAGTATCCCTTCTACCCCAAAATTCAGCGAGGAGTTGAAGGTTTCGTCTCATTTGAGAAAATTCAAATTCAATGAGCTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGTTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAACGGAACTGCACCTGTGAAACCAGGTACTGGGCTAACTGTTGCGGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCCGAGTTAAACATTCTTGGTGACCTTGTTCATCCGAATCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAGGTCCTTGCCTCTTCCTTGGCTTATCAGAATGAAAATTGCACTTGGTGCGGCCAGAGGTCTTTATTTTCTCCATGAAGAAGCTCAGAGGCCTATAATCTATCGCGATTTCAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACTCACATATCAACACGAGTTATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACATTTGACTACAAAAAGTGATGTATATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGGCGATCTATCGATAAGAATAGACCAAACGGCGAGCACAATCTCGTGGAGTGGGCAAGACCTGTACTTGGAGACCGGAGAACCTTCTTCCAGATAATTGATCCTCGCCTCGAAGGTCACTTCTCAGTGAAAGGGGCGCAGAAAGCTGGCCATCTAGCGGCTCAATGTCTCAGCCGTGATCCAAAATCGAGACCTAAGATGAGTGAAGTTGTGCAAGCTCTAAAGCCATTGCAAAACCTCAAGGACATGGCTATCTCATCTTCTCAGTTCCAATTTGTGCGAGTAGATCGAACCACGTCCTTGCCAAGGTCTAAAAATGGCATGCAAACACAGTTAACATCTTTATCAAGGAAGGGTCAACCTGTGAGGATCTTGTCGAGTCCAAACCGTCCACACGGTTCTCCATTTCATCATTTTAGCAAGTCACCAAAGCCTAATGGGTAA 1425 0.44 MVFRNNAIQAGSLDVGKSKGRMKNDDAEEEIECCVQFSFIRSCIPSRSKVNSSIGSTSTHYVDKKPAAEENKKETSAPPGSSTTSNAESIPSTPKFSEELKVSSHLRKFKFNELKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWLIRMKIALGAARGLYFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTTKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRTFFQIIDPRLEGHFSVKGAQKAGHLAAQCLSRDPKSRPKMSEVVQALKPLQNLKDMAISSSQFQFVRVDRTTSLPRSKNGMQTQLTSLSRKGQPVRILSSPNRPHGSPFHHFSKSPKPNG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2897 474 CDD STKc_IRAK 127 404 - -
Lja1g2897 474 Gene3D Transferase(Phosphotransferase) domain 1 207 425 - -
Lja1g2897 474 PANTHER RECEPTOR-LIKE KINASE PLANT 60 466 - -
Lja1g2897 474 MobiDBLite consensus disorder prediction 75 94 - -
Lja1g2897 474 Gene3D Phosphorylase Kinase; domain 1 101 206 - -
Lja1g2897 474 PANTHER OS01G0588500 PROTEIN-RELATED 60 466 - -
Lja1g2897 474 SUPERFAMILY Protein kinase-like (PK-like) 95 401 IPR011009 -
Lja1g2897 474 Pfam Protein kinase domain 124 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2897 474 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2897 474 MobiDBLite consensus disorder prediction 428 474 - -
Lja1g2897 474 MobiDBLite consensus disorder prediction 428 450 - -
Lja1g2897 474 MobiDBLite consensus disorder prediction 48 94 - -
Lja1g2897 474 ProSitePatterns Protein kinases ATP-binding region signature. 127 159 IPR017441 GO:0005524
Lja1g2897 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2897 Lja-Chr1 35016011 35021501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2897 97 417 Glycoside Hydrolase AT3G07070 54.294 6.57e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g2897 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2897 - - aprc:113861691 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1644 2 16361905 16366018 Lja1g2897 1 35016011 35021501 PCT