Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2894 ATGGCAAGCAAGGTTACCTTTGTTCTATTGGCTGTTTTTGCCATTATTGTTCCATGCCTTGAGGCTGGTATTGCAGAGTTTGATGATTATCTCAAAGCCCAAGAGGAAATTGCCCGTGAAATTGCTTTTAAGTCCTATGTGCCAAACCCTGAAAATATTACAACCGAGCTCAACATGCACGTTCACATTGCCATGGAAGAGTACACAAACAGCACAAGGAGGGAACTAAGGCAGAGAGGTGGACGTAGAGGAAGAAAATGCATGGCGACCAACCCAATTGATCGTTGCTGGAGGTGTAGGAAAAATTGGGCCCAAGACCGCCAATTGCTAGCTAAATGTGGCAAGGGTTTCGGAAGAAGGGCAGTCGGAGGACTCGGCGGCCCTATCTATGTAGTCACCGATGATTCTGATAACGACATGGTTAGCCCTAAACCCGGAACCTTGAGATATGCTGTGGTCCAAAAGGGACCACTTTGGATCATTTTTGCACGTAGCATGGTCATTACATTGCAACAAGAGTTGTTGATTTCATCCGACAAGACCATTGATGGTCGTGGCGCCAATGTGCAAATTAGGGGTGGTGCTGGACTCACCATGCAATTCGTCAACAATGTCATCGTCCATGGCATTCGCGTCAAAAATATCAAGGCTAGGAATGGTGGTATGATTAGGGATTCATATAACCACGTTGGAATGAGGACCAGGAGTGATGGTGATGCCATCTCCATTTTCGGCTCATCCAACATTTGGATTGATCATCTTTCCTTGTCCGAATGTGAGGATGGTCTTGTCGACGTTATTCAGGGATCTACCGCAATCACCATCTCAAATTGCCACATGACCAAACACAACGATGTGATGTTGTTTGGAGCTAGTGACAGCTACTCTGGTGACAAGATCATGCAGATCACAGTGGCGTTCAACCACTTTGGACAGGGTCTGATCCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTCCATGTGTTGAACAATGACTACACCCATTGGCTGATGTACGCGATTGGTGGGAGTTCGGGGCCAACCATTCTGAGCCAGGGCAACAGGTTCATTGCACCTAACAACGATGCTGCCAAGGAGATCACACACAGGGATTACGCAACCCCTGCTGTATGGTCTAAGTGGCAATGGACTTCACAGAATGATCTTTTCATGAATGGTGCCAAGTTTGTTTCTTCTGGATCACCTATTGGAAAGTTGCCATTCAAGAAGGGTTTCATAATGAAACCAAGGCCTGGAATTTTTGCTAATAGGCTTACACGCTTTTCTGGGGCTCTCAATTGCAGGATTGGTAGACCTTGTTAG 1323 0.4664 MASKVTFVLLAVFAIIVPCLEAGIAEFDDYLKAQEEIAREIAFKSYVPNPENITTELNMHVHIAMEEYTNSTRRELRQRGGRRGRKCMATNPIDRCWRCRKNWAQDRQLLAKCGKGFGRRAVGGLGGPIYVVTDDSDNDMVSPKPGTLRYAVVQKGPLWIIFARSMVITLQQELLISSDKTIDGRGANVQIRGGAGLTMQFVNNVIVHGIRVKNIKARNGGMIRDSYNHVGMRTRSDGDAISIFGSSNIWIDHLSLSECEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYATPAVWSKWQWTSQNDLFMNGAKFVSSGSPIGKLPFKKGFIMKPRPGIFANRLTRFSGALNCRIGRPC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2894 440 Pfam Pectate lyase 174 356 IPR002022 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Lja1g2894 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Lja1g2894 440 PANTHER PECTATE LYASE 3 440 - -
Lja1g2894 440 PANTHER PECTATE LYASE 18-RELATED 3 440 IPR045032 GO:0030570
Lja1g2894 440 SMART amb_all 165 362 IPR002022 -
Lja1g2894 440 Pfam Pectate lyase, N terminus 24 76 IPR007524 GO:0030570
Lja1g2894 440 Gene3D - 90 433 IPR012334 -
Lja1g2894 440 SUPERFAMILY Pectin lyase-like 91 431 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2894 Lja-Chr1 34969781 34971956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2894 7 440 Polysaccharide Lyase AT1G14420 57.494 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2894 K01728 - gmx:100785801 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2894 1 34969781 34971956 Lja1g5490 1 93973020 93977501 ECH
Lja1g2894 1 34969781 34971956 Lja4g2172 4 23402482 23404959 ECH
Lja1g2894 1 34969781 34971956 Lja1g2894 1 34969781 34971956 ECH
Lja1g2894 1 34969781 34971956 Lja2g1640 2 16319169 16321666 ECH
Lja2g1110 2 10525568 10527945 Lja1g2894 1 34969781 34971956 ECH