Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2892 ATGGCAATGATGACAGAAAATGAAGTTATCTTGGGAATTAGGACCCAGAAGTGCAAGGCAGAAGGTGATCTCCAAGGAGCAAAATCTGTCAAGAGACGTAAGAGAGAGCCTGTTACTGTAATAAACACTGGTGGTGATGATAACAACCAGCAGCAAGTTGGTGAAAATTCTACAACCAACACTTCAAAGAGAAGCTCAAGATTTCGAGGTGTCAGCAGACATAGATGGACGGGTCGATTTGAAGCTCACTTGTGGGACAAGCTCTCTTGGAATGTTACACAAAAGAAGAAAGGGAAGCAAGTTTATCTTGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACTTCAACTTTCACCAATTTTCCGATATCAGATTATGAGAAAGAGATACAAATAATGCAGACAATGACCAAAGAGGAGTACTTGGCCACTTTGAGAAGAAAGAGCAGTGGCTTTTCAAGAGGGGTCTCAAAGTATAGGGGTGTTGCAAGCAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGAAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTACGGGACACAAGAGGAAGCTGCTCATGCATATGACATTGCAGCCATTGAGTACAGAGGGATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCTGAAACTGGAAGTACCCCAGAAGCAAAACTTCATCCACAGGCACTGCCAGAGTCTCAAACAGTGGCTTCCCCATCTAACTCTAGTCTAATAGAAGAGTCAAAGTCCTTGACCCTTCACAACAGTTTTTTCAGTCCAGATTACCTGAATTCCCTTGAAAAGCAAGAAGCTTTTGAAAGCCAATCCTTCCAATTCTCCAGCAACAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCATTATTTAGAGAATTGGTTGAGAAGAACTCAAATGTGTCTGAAAATGAAACTGATGGGGAAGTCACAAAGGAGCAACAGATACAGATAGCTAGTGATGATGAACTGGGTGGAATCTTCTATGATGGCATTGGTGGCATCCCATTTATCTTTGCTCCCAACAGGTTCAACTCAGAATTGCAAGAAAGAGAGCTTAATTCAATATTCTGA 1167 0.4233 MAMMTENEVILGIRTQKCKAEGDLQGAKSVKRRKREPVTVINTGGDDNNQQQVGENSTTNTSKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIQIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVASRHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEYRGIHAVTNFDLSTYIKWLKPETGSTPEAKLHPQALPESQTVASPSNSSLIEESKSLTLHNSFFSPDYLNSLEKQEAFESQSFQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVSENETDGEVTKEQQIQIASDDELGGIFYDGIGGIPFIFAPNRFNSELQERELNSIF* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2892 388 MobiDBLite consensus disorder prediction 24 40 - -
Lja1g2892 388 Pfam AP2 domain 66 125 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 Pfam AP2 domain 168 220 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 CDD AP2 168 230 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 SMART rav1_2 169 234 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 ProSiteProfiles AP2/ERF domain profile. 169 228 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 MobiDBLite consensus disorder prediction 24 66 - -
Lja1g2892 388 SUPERFAMILY DNA-binding domain 66 135 IPR016177 GO:0003677
Lja1g2892 388 Gene3D AP2/ERF domain 168 230 IPR036955 GO:0003700|GO:0006355
Lja1g2892 388 Gene3D AP2/ERF domain 66 135 IPR036955 GO:0003700|GO:0006355
Lja1g2892 388 SUPERFAMILY DNA-binding domain 168 230 IPR016177 GO:0003677
Lja1g2892 388 CDD AP2 66 135 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 14 369 - -
Lja1g2892 388 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Lja1g2892 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 369 - -
Lja1g2892 388 MobiDBLite consensus disorder prediction 42 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2892 Lja-Chr1 34956748 34959568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2892 63 276 AP2-EREBP Transcription Factor Family AT5G57390 59.545 1.00e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja1g2892 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2892 - - gmx:100792612 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2892 1 34956748 34959568 Lja1g2892 1 34956748 34959568 ECH