Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2890 ATGTACGGATTCGAAGCTCTCACCTTCAACATCCATGGCGGTTACCTTGAGGCCATCGTCAGGGGCCACCGCGCCGGTTTGCTCACCACCGCCGACTACAACAACCTCTGCCAATGCGAATCCCTTGACGACATCAAGATGCACCTCTCCGCCACCGAGTACGGCCCCTATCTCCAAAACGAACCTTCTCCATTGCATACCACCACAATTGTGGAGAAATGTACTCTAAAGCTGGTTGATGATTACAAGCACATGCTATGCCAAGCCACAGAGCCCCTGTCAACTTTTTTAGAATACATCACATATGGTCACATGATAGACAATGTTGTGTTGATCGTTACTGGAACCTTGCATGAGAGAGATGTTCAAGAGCTACTAGAAAAGTGCCATCCACTAGGCATGTTTGACAGTATTGCTACTCTGGCAGTTGCTCAGAATATGCGGGAGCTGTACAGGCTGGTTCTTGTTGACACTCCTTTGGCTCCATATTTCTCTGAATGCATTACATCAGAGGACTTGGATGATATGAACATTGAAATAATGAGGAACACACTTTACAAGGCATACCTTGAAGATTTTTACAGATTTTGTCAGAAACTCGGTGGTGCCACTGCTGAGATTATGTCTGACCTTCTAGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTAGCATAAATAGCATTGGTACTGAGCTTACCAGAGATGATCGTAGAAAATTGTACTCTAACTTTGGTTTGCTTTACCCCTATGGTCACGAGGAACTTGCTGTCTGTGAGGATGTTGATCAGGTTCGTGCTGTCATGGAAAAATACCCTCCCTATCAATCTATTTTTGCCAAGTTATCATATGGAGAGAGCCAGATGCTTGACAAGGCATTCTATGAGGAGGAGGTGAAGAGGCTCTGCTTGGCGTTTGAGCAACAGTTTCACTATGCTGTGTTCTTCGCGTATATGAGGTTAAGGGAACAGGAGATCAGGAACCTAATGTGGATTTCAGAATGTGTGGCTCAGAATCAGAAGTCCAGAGTTCATGACAGTGTTGTCTTCATATTTTAG 1056 0.4489 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCESLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNISINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDVDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2890 351 PANTHER V-TYPE PROTON ATPASE SUBUNIT 1 351 - -
Lja1g2890 351 Pfam ATP synthase (C/AC39) subunit 16 344 IPR002843 GO:0046961
Lja1g2890 351 SUPERFAMILY V-type ATP synthase subunit C 14 349 IPR036079 -
Lja1g2890 351 Gene3D - 91 199 IPR035067 -
Lja1g2890 351 Gene3D ATP synthase (C/AC39) subunit, domain 3 14 335 IPR044911 -
Lja1g2890 351 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 1 351 IPR016727 GO:0033179|GO:0046961|GO:1902600
Lja1g2890 351 PIRSF V-ATP_synth_D 4 350 IPR016727 GO:0033179|GO:0046961|GO:1902600
Lja1g2890 351 Gene3D - 206 309 IPR035067 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2890 1 351 Primary Pumps ATPases(2) AT3G28710 94.017 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2890 K02146 - gmx:100800553 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2890 1 34944759 34949625 Lja1g2890 1 34944759 34949625 ECH