Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2885 ATGCCTGTGATGCTTGGGTATGATCTTCAAACACTGAAAAGGGTTTACTATCAGGAATTTTTACAGCTGAAGTCTGGTTCAAGGGGTAGTTTGAGTAAGAAAATGATATTTTATGAGGGATATAGTGTTTTTTTTTCTTTTCCATCTTCCGACATAATTTCTAAATTTAGTGACCTTAACTTTTATTTTGAAAGGCTCAAATCTGCAAAAGCTGAGATGGGTGAGGTGAAAGAAGAAAACGAGAGACTCAAGATGATGTTGAATCAAGTAGAAAAGGACTATCACTCACTTCAACTACGTTTCTTTGACATCCTCCACAAAGAAGTTTCCAACAAAGGTGTAGCTGAAAATTCACCTACTCCCCATGATCATGAAAATGAAGAACCTGAACTTGTGTCACTTTGCCTTGGAAGAGGACCTAGAGAATCTAAGAAAGGAGCAATAATAGAAAAGTTGAACCAACCAAGAGAAAAAGAAGATGTGGAAGTGAACCTTAGTCTTGGATTGGAGTCAAAATATCTTCTTTCAATGGAGGTGGTGTCTGATTTGAGTCCTGTGAACAGCTCAGAAGAATTACCAAAGGAAGTAGAGTTAGCTGAGGGAACATTGAAAACAAATAAATCAGCAAAAGTGGTGAATGTGAATGATGACATTTCAGATCAAATGCCTGCAAAGAAAGCCAGGGTATCTGTGAGAGCTAGATGTGACACTCCCACGATGAATGATGGATGCCAGTGGAGAAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCACGAGCATATTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTGCAAAGATGTGCTGATGACTTGTCCATCTTAATCACCACATATGAAGGAACCCACAACCACCCACTTCCAGTCTCAGCAGCAGCCATAGCTTCCACCACTTCTGCTGCAGCTTCAATGCTTCTATCAGGTTCTTCAACATCTCACCATGCAGGTTACACTTCTGCACTCAGTGGTCTCAGTTTCAATCAGCAATTTGGTGAACAAAGAGCAAAACATGCCTTCTTACCACCAAACCAAGCCTCACATTTGTTCCCTACAGTCACTGTAGACCTCACTTCATCAAACAACATGGCTTCTTCAAACCAAAGATTTTCTCCAAACAGTCTTAGCTTTTGCTCCCCTCATGAGCCTAATTTCACACATTCCAATGTTTGGGGTAATAAGGGGTTCCCCAATAATGGCACATTAAGACCCTTAAACCATTTCCAAGAACATAATTTCTACCATCAACAATGCATGACAACAAACCAAACAAGTAATTCTTTGGCAGAAACAATTACCAAAGCAATCAGCACAGATCCAAGCCTTCACTCAGTGATAGCTGCTGCTGTTTCATCACTAGTGGGACCAAGTGGGAACCAAAAACCAGGGTTGAACTTGAAACTGGGTCAGCATCATGATCATCAATTAGTTTCTTCTAATTTGTTGAACCAGAATAATGGGAAAGGATGCATAAATGGCTACTTTAAAAGGTTGACCTCTGCAAATTCTCAGGCCAGAAACTTCATGCTTCTCAAACCCACATTGCCATTTTCTGTTTCCAATAGTAGCACAGGCACATCTCCTTCCATTGTTAATCAGATCAAGCATAATTATGATCCTGATATGAACACACATCATTAG 1677 0.4025 MPVMLGYDLQTLKRVYYQEFLQLKSGSRGSLSKKMIFYEGYSVFFSFPSSDIISKFSDLNFYFERLKSAKAEMGEVKEENERLKMMLNQVEKDYHSLQLRFFDILHKEVSNKGVAENSPTPHDHENEEPELVSLCLGRGPRESKKGAIIEKLNQPREKEDVEVNLSLGLESKYLLSMEVVSDLSPVNSSEELPKEVELAEGTLKTNKSAKVVNVNDDISDQMPAKKARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDLSILITTYEGTHNHPLPVSAAAIASTTSAAASMLLSGSSTSHHAGYTSALSGLSFNQQFGEQRAKHAFLPPNQASHLFPTVTVDLTSSNNMASSNQRFSPNSLSFCSPHEPNFTHSNVWGNKGFPNNGTLRPLNHFQEHNFYHQQCMTTNQTSNSLAETITKAISTDPSLHSVIAAAVSSLVGPSGNQKPGLNLKLGQHHDHQLVSSNLLNQNNGKGCINGYFKRLTSANSQARNFMLLKPTLPFSVSNSSTGTSPSIVNQIKHNYDPDMNTHH* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2885 558 Pfam WRKY DNA -binding domain 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2885 558 MobiDBLite consensus disorder prediction 533 558 - -
Lja1g2885 558 Coils Coil 59 100 - -
Lja1g2885 558 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2885 558 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2885 558 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2885 558 MobiDBLite consensus disorder prediction 533 550 - -
Lja1g2885 558 Gene3D WRKY domain 224 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2885 558 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 542 IPR044810 GO:0003700
Lja1g2885 558 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 61 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2885 Lja-Chr1 34823187 34832763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2885 73 519 WRKY Transcription Factor Family AT5G15130 45.639 2.13e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g2885 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2885 - - lja:Lj1g3v2953600.1 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2885 1 34823187 34832763 Lja1g5491 1 94054460 94058737 ECH
Lja1g2885 1 34823187 34832763 Lja4g2169 4 23367900 23372203 ECH
Lja1g2885 1 34823187 34832763 Lja1g2885 1 34823187 34832763 ECH
Lja2g1115 2 10576147 10578739 Lja1g2885 1 34823187 34832763 ECH