Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2884 ATGGGTTATCTACGCAAAGCTTCCAAGACATTGAGGCAATCAAATTGCCTCTCGTTGCTGTTCAATTTCACTCCATTAACCACCAGAATAACCCATCAAAGCTTTTCCATTACGCGTGCTTTGTTCTGTTCCCAGTCCCGCCAGAACAACACCAGAGAGAAGAGCATCATTGATTTGACCCAGTACCCTCCAGAACTCATCAGAAACTTCTCCATCATTGCTCATGTTGATCATGGCAAGTCCACTCTTGCTGATCGCCTTCTTGAGCTCACTGGAACCATTAAGAAAGGCCTTGGCCAGCCTCAGTATCTTGATAAGTTGCAGGTGGAGAGAGAAAGGGGAATCACTGTTAAAGCACAGACAGCAACAATGTTCTATAAGAACATCATAAATGGTGATAAGTGTAGTGATGGAACGGAGTCACCTACTTATTTGGTGAATCTTATTGACACTCCTGGTCATGTGGATTTTAATTATGAAGTGTCAAGGTCACTGGCTGCTTGCCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTCCAAGCACAAACCGTTGCTAACTTTTACCTTGCTTTTGAGTCTAACCTAACGATTGTACCTGTAATAAACAAGATTGACCAGCCGACTGCTGATCCTGATCGGGTTATAGCACAATTGAAATCAATGTTTGATCTTGATCCAAGTGATGCGCTGCTAACGTCTGCTAAAACTGGGCAAGGTCTTGAGCAAGTCCTTCCGGCAGTCATAGAGCGTATACCTCCGCCTCCAGGGAGGAACGAATCTCCTCTGCGCATGCTCTTACTTGATTCATATTATGATGAATACAAAGGTGTAATATGCCATGTCGCTGTTATTGATGGTACCCTGCGCAAGGGTGACAAGATTGCTGCTGTTGCTACTGGCCAGTCTTATGAAGCTTTTGACATAGGCATCCTGCACCCTGAACTTACACCTACTGGAATCTTGCTTGCTGGACAAGTTGGTTATGTTGTTAGTGGCATGCGGTCAACAAAAGAGGCACGTATTGGAGATACAATTTACCATGTGCGAAGAACCGTAGAGCCTCTTCCAGGCTTCAAGCCAGCAAGACATATGGTATTCTCTGGTCTTTATCCAGCTGATGGATCTGATTTTGAAGCACTCAATCATGCAGTAGAGAGGCTGACATGCAATGATGCCAGTGTCTCTGTTTCAAAAGAAACTAGCACTGCTCTAGGTCTGGGATTCAGGTGTGGATTTTTAGGCCTTCTTCACATGGATGTTTTTCATCAAAGGCTTGAACAGGAGTATGGAGCTCATGTAATCTCAACTGTTCCTACCGTGCCTTATACATTTGAGTATTCTGATGGCAGCAAGTTAGAAGTTCAGAATCCTGCAACATTACCCTCTAATCCCAAGCAACGAGTGACGGCCTGTTGGGAACCTACAGTTTTAGCTACCATAATTATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGAGGTCAGCAGTTGGAATACTCATTCATTGACAGTCAACGGGTATTCATGAAGTATCGCCTGCCTTTAAGGGAAATTGTTGTCGACTTTTATAATGAATTGAAGAGTATAACATCAGGTTATGCATCGTTTGATTATGAGGATTCAGATTATCAACTAGCTGATCTGGTGAAACTCGATATTCTCTTGAATGGGCAACCAGTTGATGCAATGGCAACCATTGTTCATACCTCGAAAGCATATCGTGTTGGGCGTGAATTGGTGGAGAAATTGAAGAAAGCCATAGACAGGCAAATGTTCGAGATAACCGTACAAGCTGCCATTGGGTCTAAAATTATAGCAAGGGAGACGATTTCCGCAATGAGAAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATATTACTCGAAAAAGGAAGCTATTGGAGAAACAAAAGGAAGGAAAGAAGCGAATGAAGCGTGTTGGTTCTGTTGATATACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2013 0.4332 MGYLRKASKTLRQSNCLSLLFNFTPLTTRITHQSFSITRALFCSQSRQNNTREKSIIDLTQYPPELIRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNIINGDKCSDGTESPTYLVNLIDTPGHVDFNYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVIAQLKSMFDLDPSDALLTSAKTGQGLEQVLPAVIERIPPPPGRNESPLRMLLLDSYYDEYKGVICHVAVIDGTLRKGDKIAAVATGQSYEAFDIGILHPELTPTGILLAGQVGYVVSGMRSTKEARIGDTIYHVRRTVEPLPGFKPARHMVFSGLYPADGSDFEALNHAVERLTCNDASVSVSKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYTFEYSDGSKLEVQNPATLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQLADLVKLDILLNGQPVDAMATIVHTSKAYRVGRELVEKLKKAIDRQMFEITVQAAIGSKIIARETISAMRKNVLAKCYGGDITRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2884 670 Gene3D - 440 552 - -
Lja1g2884 670 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Lja1g2884 670 PRINTS GTP-binding elongation factor signature 199 208 IPR000795 GO:0003924|GO:0005525
Lja1g2884 670 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Lja1g2884 670 PRINTS GTP-binding elongation factor signature 147 157 IPR000795 GO:0003924|GO:0005525
Lja1g2884 670 PANTHER TRANSLATION FACTOR GUF1-RELATED 53 668 IPR006297 GO:0005525
Lja1g2884 670 CDD LepA 68 256 - -
Lja1g2884 670 Gene3D Elongation Factor G (Translational Gtpase), domain 3 358 439 - -
Lja1g2884 670 Gene3D - 554 628 IPR038363 -
Lja1g2884 670 Gene3D Translation factors 260 357 - -
Lja1g2884 670 SUPERFAMILY EF-G C-terminal domain-like 366 443 IPR035647 -
Lja1g2884 670 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Lja1g2884 670 CDD EF4_II 264 349 - -
Lja1g2884 670 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 257 IPR000795 GO:0003924|GO:0005525
Lja1g2884 670 Pfam Elongation factor Tu GTP binding domain 67 254 IPR000795 GO:0003924|GO:0005525
Lja1g2884 670 Pfam Elongation factor Tu domain 2 278 348 IPR004161 GO:0005525
Lja1g2884 670 SUPERFAMILY EF-G C-terminal domain-like 474 568 IPR035647 -
Lja1g2884 670 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 53 668 - -
Lja1g2884 670 Hamap Elongation factor 4 [lepA]. 60 670 IPR006297 GO:0005525
Lja1g2884 670 Gene3D - 65 258 IPR027417 -
Lja1g2884 670 TIGRFAM lepA: elongation factor 4 66 669 IPR006297 GO:0005525
Lja1g2884 670 TIGRFAM small_GTP: small GTP-binding protein domain 70 244 IPR005225 GO:0005525
Lja1g2884 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 278 IPR027417 -
Lja1g2884 670 SUPERFAMILY Translation proteins 255 352 IPR009000 -
Lja1g2884 670 Pfam Elongation factor G C-terminus 475 560 IPR000640 -
Lja1g2884 670 Pfam GTP-binding protein LepA C-terminus 562 668 IPR013842 -
Lja1g2884 670 CDD EF4_III 365 440 - -
Lja1g2884 670 CDD lepA_C 475 554 IPR035654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2884 Lja-Chr1 34807746 34813047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2884 67 208 Eukaryotic Initiation Factors Gene Family AT1G56070 41.497 1.42e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2884 K21594 - gmx:100781092 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2884 1 34807746 34813047 Lja1g2884 1 34807746 34813047 ECH