Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2876 ATGTGTACTGTACTTGTTATTTATTTTGTGATTATGGGGTTTCAGTTGCAGTTACTAGCTGCATCTGCATCATCATCATCATCATCGCAGCAGCAGCAGCTTCAGTTGGAAGCAAATGCTATACTGAGCAGTGGATGGTGGAACACTTCTGATCCATTCTACAATATCTCCCTTCGCTGTCAGTGGTATGCTATAGCTTGCAACAAGGCTGGAAGCATAACAGAAATTGACTATGTGCCTTATTATCCTGATGAAGCAGCAGCAGTGATTCATTTTGCGAAACTCAACCTCTCAGCTTTCCAGAATTTAGAAAAGCTCGCTGTTCGTGAAAGTGAACTGCGTGGTAATATCCCACCAGAAATTGGTACTCTCTCCAAGCTCACTCATATTGATCTGTCATTCAATTCTCTTGAAGGTCACATACCTTCTTCACTAGCAAATCTAAGCTTATTACAGCACCTAGACATGTTTAGAAACAACATTGAAGGCTCCATTCCTTGGGAGTTAGGGTCCCTAAAAAACCTCATTACATTAGATCTATCTAGTAATAGGATCAGTGGGACCTTGCCTCTTACCCTTACAAACCTCACTCAATTACAGAACCTTTACATTTCCGACAATCTTCTCGGTGGTTCCCTTCTTTCTAATTTTGATCAATTAACCAACTTGCAACAGTTACGGCTATCTAACAACTTCATCATCTGGACCTTGCCTATTTCACTTACAAATCTCACCCAGTTAGAAGTGCTTGATATTTCCTACAATCTTCTCATTGGTCCCTTCCCTTCTAATTTAGATCGATTAATGAAGCTGAAATCAATGTGGCTGGATAGCAACTCCATCAATGGGACCTTGCCCACTTCACTTACAAACCTCACTCAATTAGAACACCTTGGCACTTCCGACAATCCACTTGCTGGTTCCCTCCCTTCTAATTTGGGACAATTAACCAAGTTGCGATGGATGCAGCTGCGCAACAACTCCATCTCTGGGAACATAGTAGTACCCTTGTCAAAATACCTTGCCTTTGTTGACCTCAGTCACAACCTCTTCACTGGTGATATACCACCACAACTCGGGAATTCACCAGAGTTATTCTATTCACCAGAAGTGATCATGTCCTACAATTATTTGAAGGGTCCTATTCCAGATGGTATCTCTGGTTATGCTCTAAGAGGGAACAAGGATGTTTGTACTAACATTTCGTATTTCCAAATCAACCTCCAGTTCAGACCTTGTAACAGCAAGATAATTCTTCCTATCCTCATTTTTATAATCATGGCCATCTCATTAGTCATGTGTCTCAAGCACCATAACACTACAGTTAAAAACAAACATGCAAACACAATGACAACTAAGAATGGGGATGTCTTTTGCATATGGAATTATGATGGCAACATGGCATATGAAGACATCATTAGAGCAACAGAAGACTTTGACCTTAGATATTGCATTGGAACAGGAGCATATGGGAGTGTTTATAAGGCACAATTACCTAGTGGCAAGGTTGTGGCCTTGAAGAAGCTCCATGGCTTTGAAGCAGAGGTGCCAGCTTTGGATGCGAGGTTTAGAAATGAAATTAAGGTGTTATCAGAAACAAGGCATCGTCATATTGTGAAGCTTTATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATCTATCAATACTTGGAGAGAGGAAGCTTATTCTCTGTCTTGTATGATAATGCGGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTAACATTATAAAAGGTGTTGCTCATGCTTTGACATATCTTCATCATGATTGCATCCCTCCAATAGTTCATAGAGACATATCTTCCAGCAATATCTTACTTAACACGGAGTGGCAGCCTAGTGTTTCTGATTTTGGCACAGCCCGAATCCTCAAACACAATTCATCCAATAGAACTATAGTTGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTATACTATGGTTGTGAGCGAAAAGTGTGATGTCTATAGCTTTGGAGTGGTGGCGCTCGAAACTTTCGTAGGAAAGCATCCTAAGGAATTACTATCATCACTACAATCAACATCAAATGAAGACATCACATTATGTGAAATACTAGACCCACGCCTTCCATTTCCAGGGATGACTGCTGCTTTACATGACATAGTTCAGGACTTCAGTCCCAATCCTTCTTCTCGACCAACAATGAGATGTGTGTCTCAGTATTTTCTTTCTCGGCTAACACCATTAAGCATTCCTCTACGTGAAATTACATTACAGCAGCTCATGGCTCAAGAACTCCGTCATTTAGAGTTGCCAACTCTTGAAATCGAAATTTCAAACTGA 2334 0.4075 MCTVLVIYFVIMGFQLQLLAASASSSSSSQQQQLQLEANAILSSGWWNTSDPFYNISLRCQWYAIACNKAGSITEIDYVPYYPDEAAAVIHFAKLNLSAFQNLEKLAVRESELRGNIPPEIGTLSKLTHIDLSFNSLEGHIPSSLANLSLLQHLDMFRNNIEGSIPWELGSLKNLITLDLSSNRISGTLPLTLTNLTQLQNLYISDNLLGGSLLSNFDQLTNLQQLRLSNNFIIWTLPISLTNLTQLEVLDISYNLLIGPFPSNLDRLMKLKSMWLDSNSINGTLPTSLTNLTQLEHLGTSDNPLAGSLPSNLGQLTKLRWMQLRNNSISGNIVVPLSKYLAFVDLSHNLFTGDIPPQLGNSPELFYSPEVIMSYNYLKGPIPDGISGYALRGNKDVCTNISYFQINLQFRPCNSKIILPILIFIIMAISLVMCLKHHNTTVKNKHANTMTTKNGDVFCIWNYDGNMAYEDIIRATEDFDLRYCIGTGAYGSVYKAQLPSGKVVALKKLHGFEAEVPALDARFRNEIKVLSETRHRHIVKLYGFCLHRRIMFLIYQYLERGSLFSVLYDNAEAMELDWRKRVNIIKGVAHALTYLHHDCIPPIVHRDISSSNILLNTEWQPSVSDFGTARILKHNSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETFVGKHPKELLSSLQSTSNEDITLCEILDPRLPFPGMTAALHDIVQDFSPNPSSRPTMRCVSQYFLSRLTPLSIPLREITLQQLMAQELRHLELPTLEIEISN* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2876 777 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 32 765 - -
Lja1g2876 777 ProSiteProfiles Protein kinase domain profile. 479 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2876 777 PRINTS Leucine-rich repeat signature 244 257 - -
Lja1g2876 777 PRINTS Leucine-rich repeat signature 175 188 - -
Lja1g2876 777 Pfam Protein kinase domain 484 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2876 777 SMART LRR_sd22_2 268 294 - -
Lja1g2876 777 SMART LRR_sd22_2 244 267 - -
Lja1g2876 777 SMART LRR_sd22_2 196 219 - -
Lja1g2876 777 SMART LRR_sd22_2 172 193 - -
Lja1g2876 777 SMART LRR_sd22_2 124 150 - -
Lja1g2876 777 Gene3D Ribonuclease Inhibitor 193 403 IPR032675 -
Lja1g2876 777 ProSitePatterns Tyrosine protein kinases specific active-site signature. 603 615 IPR008266 GO:0004672|GO:0006468
Lja1g2876 777 SMART LRR_typ_2 172 195 IPR003591 -
Lja1g2876 777 SMART LRR_typ_2 292 316 IPR003591 -
Lja1g2876 777 SMART LRR_typ_2 220 244 IPR003591 -
Lja1g2876 777 SMART LRR_typ_2 124 148 IPR003591 -
Lja1g2876 777 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Lja1g2876 777 Gene3D Transferase(Phosphotransferase) domain 1 558 744 - -
Lja1g2876 777 SUPERFAMILY Protein kinase-like (PK-like) 464 738 IPR011009 -
Lja1g2876 777 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 32 765 - -
Lja1g2876 777 SUPERFAMILY L domain-like 97 383 - -
Lja1g2876 777 Gene3D Ribonuclease Inhibitor 25 192 IPR032675 -
Lja1g2876 777 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Lja1g2876 777 Gene3D Phosphorylase Kinase; domain 1 437 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2876 Lja-Chr1 34660810 34663494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2876 103 651 Receptor kinase-like Gene Family AT4G08850 36.833 1.37e-116 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g2876 Pkinase 6.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2876 - - mtr:MTR_7g009970 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2876 1 34660810 34663494 Lja1g2876 1 34660810 34663494 ECH