Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2875 ATGGCATATGAAGACATTACTAGAGCAACAGAAGACTTTGACTTGAAATTTTGCATTGGGACAGGAGCATATGGGAGTGTTTATAAAGCACAATTACCTAGTGGCAAGGTTGTTGCCTTGAAGAAGCTCCATGGCTTTGAAGCAGAGGTTCCAGCTTTGGATGCGAGTTTTAGAAATGAAATCAAGGTATTATCAGAAGTAAAGCATCGACATGTTGTGAAGCTTTACGGATTTTGCTTGCACAGAAGGATCATGTTTTTGATCTATCAATACATGGAGAGAGGAAGCTTGTTTTCTGTCTTGTATGATGACGCGGAAGCAATGGAATTGGATTGGAAAAGGAGGGTTAACATTGTTAAAGGTGTTGCTCATGCTTTGTCATATCTTCATCATGACTGCATCCCTCCAATAGTTCATAGAGACATATCTTCCAGCAATATCTTACTTAACACGGAGTGGCAGCCTAGTGTTTCTGACTTTGGCACAGCCCGAATCCTCCAGCATGATTCATCCAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCATACACTATGGTTGTGAGTGAAAAGTGTGATGTTTATAGCTTTGGAGTTGTGGCACTTGAAACTTTAGTGGGAAGCCATCCTAAGGAAATACTGTCATCACTTCAATCAGCATCAACTGAAGACATCAAATTATGTGAAATATTGGACCCGCGCCTTCTGTTTCCAGGCAGGGCTGTTTTGCTTGACATACTTCAGGTTGCAATAGTGACATTATCATGCTTAAATCCAAATCCTTGCTCGAGACCAACAATGAAATGTGTGTCTCAATACTTCCTCAGACCACTAGCACCACTACACATTCCTGCCCGTGAAATTTCACTGCACCAGCTCATGAGTCAAGAACTCAGCATGACTTAA 921 0.4137 MAYEDITRATEDFDLKFCIGTGAYGSVYKAQLPSGKVVALKKLHGFEAEVPALDASFRNEIKVLSEVKHRHVVKLYGFCLHRRIMFLIYQYMERGSLFSVLYDDAEAMELDWKRRVNIVKGVAHALSYLHHDCIPPIVHRDISSSNILLNTEWQPSVSDFGTARILQHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGSHPKEILSSLQSASTEDIKLCEILDPRLLFPGRAVLLDILQVAIVTLSCLNPNPCSRPTMKCVSQYFLRPLAPLHIPAREISLHQLMSQELSMT* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2875 306 PIRSF ILK 3 278 - -
Lja1g2875 306 Gene3D Transferase(Phosphotransferase) domain 1 92 283 - -
Lja1g2875 306 ProSitePatterns Protein kinases ATP-binding region signature. 19 41 IPR017441 GO:0005524
Lja1g2875 306 Pfam Protein kinase domain 18 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2875 306 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lja1g2875 306 ProSiteProfiles Protein kinase domain profile. 13 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2875 306 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 304 - -
Lja1g2875 306 ProSitePatterns Tyrosine protein kinases specific active-site signature. 137 149 IPR008266 GO:0004672|GO:0006468
Lja1g2875 306 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 304 - -
Lja1g2875 306 SUPERFAMILY Protein kinase-like (PK-like) 3 278 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2875 Lja-Chr1 34635923 34637061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2875 3 185 Receptor kinase-like Gene Family AT4G08850 56.989 1.81e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g2875 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2875 - - lja:Lj0g3v0266969.1 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2875 1 34635923 34637061 Lja1g2875 1 34635923 34637061 ECH