Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2874 ATGGACTTCCCATCATCTCACCCTTTCATGTTTAACACCACTGAAGATCACGACCACCACCTACCTTCAATCTCTCTCAACAACTTTTCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCACCTTTTCTGTTGAAGCGATCCATGTCATTTTCCGGCACCGAAAACAAGTGCAATAAAGTTCATGGAGATCAAGATGAGTTATCTGATGATGGATTGTACCAGAGTGGGGAGAAGAAAAAGAGGCTGAACTTGGAGCAGGTGAAGGCCCTTGAGAAGAGTTTTGAGTTGGGGAACAAACTTGAGGCAGAAAGGAAAGTGCAGCTAGCTAAGGCTCTTGGGTTGAAGCCAAGACAGATTGCAATATGGTTTCAGAATAGGAGGGCAAGGTGGAAAACAAAGCACTTGGAGAAGGAATTTGTTGTCCTCAAGAAGCCGTTTGATGCAGCCAAGGCTGACAATGATGAACTTAAACTTCAGAATCAGAAGCTATACACAGAGTTACAAGCTTTGAAAAGAAGGGATTGGTGTGAAGCTCGAACAATCAGCTTTAAGAAAGAAACTGAGGGTACTTGGAGCAATGGAAGTGAAAACAGCTCAGACATAAATTTAGATCTCTCAAGAACATCAATTTCAAATAGTCCTGTATCTCCCCAGAACAATAAAAACCTTATGACCACTTCAATAAAAACCCCCAGCATAACCCAACTCCTTCAATTCTCATCAAGGCCAAATCTCCAAGATGAAGGCTTGTGCAACATGTTTCACAACATTGATGAGCACCAGAACTTTTGGCCCTAG 801 0.4295 MDFPSSHPFMFNTTEDHDHHLPSISLNNFSSLPPQHFQGGAPFLLKRSMSFSGTENKCNKVHGDQDELSDDGLYQSGEKKKRLNLEQVKALEKSFELGNKLEAERKVQLAKALGLKPRQIAIWFQNRRARWKTKHLEKEFVVLKKPFDAAKADNDELKLQNQKLYTELQALKRRDWCEARTISFKKETEGTWSNGSENSSDINLDLSRTSISNSPVSPQNNKNLMTTSIKTPSITQLLQFSSRPNLQDEGLCNMFHNIDEHQNFWP* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2874 266 Gene3D - 74 141 - -
Lja1g2874 266 Coils Coil 147 174 - -
Lja1g2874 266 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Lja1g2874 266 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 266 - -
Lja1g2874 266 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Lja1g2874 266 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Lja1g2874 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 266 IPR045224 GO:0003700
Lja1g2874 266 SUPERFAMILY Homeodomain-like 72 135 IPR009057 -
Lja1g2874 266 CDD homeodomain 79 135 IPR001356 GO:0003677
Lja1g2874 266 SMART HOX_1 77 138 IPR001356 GO:0003677
Lja1g2874 266 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Lja1g2874 266 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Lja1g2874 266 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2874 Lja-Chr1 34631824 34634407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2874 1 260 Homeobox Transcription Factor Family AT3G01220 47.909 4.37e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g2874 Homeodomain 8.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2874 K09338 - gmx:100797920 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2874 1 34631824 34634407 Lja1g2874 1 34631824 34634407 ECH
Lja2g1628 2 16225257 16228049 Lja1g2874 1 34631824 34634407 PCT