Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2868 ATGTTTTTCGATTCTCAAAAGACTCACAAATTTCACTTCATCTTTGCAGGGTTTGAAGTAGAAGAAAGTAGAGAAGAATTTGAGGGTAACTGTACCATGAGGAAGAGTCATGTGGTTGTGAGAAGAGTGGAATCTCCTACTGGGAGGAATGTGAGATATGGAGAGTGCCAAAAGAACCATGCAGTCAATGTTGGAGGATATGCTGTGGATGGTTGCAGGGAGTTCATGGCAAGTGGTGCAGAAGGAACAAGTGTTGCTCTCACTTGTGCTGCTTATGGCTGCCATAGGAGCTTCTATAAGAAAGAGGTCTGGCCAGAAGCTGAGTGTGACTGTTCTTCTTCCCCATCAGCAAGTGGACGTTGA 363 0.449 MFFDSQKTHKFHFIFAGFEVEESREEFEGNCTMRKSHVVVRRVESPTGRNVRYGECQKNHAVNVGGYAVDGCREFMASGAEGTSVALTCAAYGCHRSFYKKEVWPEAECDCSSSPSASGR* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2868 120 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Lja1g2868 120 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 113 - -
Lja1g2868 120 Pfam ZF-HD protein dimerisation region 50 103 IPR006456 -
Lja1g2868 120 PANTHER BNAA09G44460D PROTEIN 47 113 - -
Lja1g2868 120 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2868 Lja-Chr1 34518066 34518918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2868 33 116 Zinc finger-homeobox gene family AT3G28917 60.825 4.64e-33 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja1g2868 ZF-HD_dimer 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2868 - - aprc:113868039 142.51