Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2867 ATGGACATAACCCCAACAACAACGATCATCACCAACATCAACAACACTGCAACACCAACAACAACAATTGCAATTGCTGCAGCAGCAACTTCATCAAAATCCCCAGAGCATGAAACTGAGACACCACCCAGGATTGCTAACACCACCACCCCACCACCAACAAAGGCTTTGTCTTTTTCCAACGGTGTTCTCAAACGCCACCACCCCTCTTCCTACCACCACCACCACCACCACCCCCTTTCTGCTAATCACACCACCATGGCGGTTGCTTACAAAGAATGCCTCAAAAACCACGCCGCCAATTTAGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCACCTTCCGCCACCGCCGCCGACCCCAGCTCGCTAAAATGCGCTGCCTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAAGAGCCGCCAATCTCCACCGCTGTGATTGAGTACCAGCCCCACCACCGCCACCACCCTCCTCCGCCGCCGTCGTTCCAGCCTTCCAGCCGCAGCCCAAATTCAGCTTCTCCTCCTCCGATCTCGTCCTCCTACTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCACCGGACTGGCGGCGCCGCCGGAGAACGCTGCGGGCCCCACCTCGTCCTCAAGGAAGCGTTTCAGGACCAAGTTCAGCCAGGAGCAGAAGGAAAAGATGCTGAAATTCGCTGAGAGAGTTGGGTGGAAAATGCAGAAGAAGGACGAGGATTTTGTTCAGGATTTCTGCAACGAGATTGGAATTGAAAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAGAACACTTTTGGGAAGAGAGATGGTAGCAACGAAATCAACAACAACAACATCAACAACAATATCAACAATGCTGGTTCTGCTAAGAGTTTTTTTGCAAAGGAAAATCATGACCCTGTTATCACCAACATTAGCAGCGCCTCTGAAATCAATGGCAATGGAAATCGCAACCATGGTGCTGAGGATCCAATTCATCATCACTTCCAGAACGATGGTGGAGCAACAGTTCGTGCTAATGGGTCATCTTCATCTTGA 1074 0.5307 MDITPTTTIITNINNTATPTTTIAIAAAATSSKSPEHETETPPRIANTTTPPPTKALSFSNGVLKRHHPSSYHHHHHHPLSANHTTMAVAYKECLKNHAANLGGHALDGCGEFMPAPSATAADPSSLKCAACGCHRNFHRREPEEPPISTAVIEYQPHHRHHPPPPPSFQPSSRSPNSASPPPISSSYYPSAPHMLLALSTGLAAPPENAAGPTSSSRKRFRTKFSQEQKEKMLKFAERVGWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNTFGKRDGSNEINNNNINNNINNAGSAKSFFAKENHDPVITNISSASEINGNGNRNHGAEDPIHHHFQNDGGATVRANGSSSS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2867 357 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 275 IPR006455 -
Lja1g2867 357 SUPERFAMILY Homeodomain-like 208 279 IPR009057 -
Lja1g2867 357 MobiDBLite consensus disorder prediction 204 224 - -
Lja1g2867 357 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 310 - -
Lja1g2867 357 Pfam ZF-HD protein dimerisation region 89 143 IPR006456 -
Lja1g2867 357 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 142 IPR006456 -
Lja1g2867 357 MobiDBLite consensus disorder prediction 322 357 - -
Lja1g2867 357 MobiDBLite consensus disorder prediction 157 187 - -
Lja1g2867 357 MobiDBLite consensus disorder prediction 162 178 - -
Lja1g2867 357 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 91 142 IPR006456 -
Lja1g2867 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 310 - -
Lja1g2867 357 Gene3D - 206 278 - -
Lja1g2867 357 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2867 Lja-Chr1 34476077 34477697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2867 1 287 ZF-HD Transcription Factor Family AT5G15210 47.931 1.03e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja1g2867 ZF-HD_dimer 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2867 - - lja:Lj0g3v0279449.1 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1612 2 15865569 15867269 Lja1g2867 1 34476077 34477697 PCT