Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2865 ATGAGGAAATGGTGCTTCCAGCTCCCCTGGATAGTACTGCCAAAACCCACCTCTTCTATGTGGCATCAGGGCATCAATTCAAAGACTCAATGTCAGCCAAATATTGAGCCAGATGGGATCAGAACACCTGGACCCTACTTTAATCTGCAATATCTGAGCAGTGCTTATGAAGCTTTCTACAAACTCTTTTCTTTTCTTTCCTTTCTTCTCACTTTTCAATTTCTAGACCATGCTTTCATGCACATGATCTGCATCCTAGAGACTGTTTGTATACTTTCTCACAGAGAAATGGAGGAATGCAAAAAGGAAGATCAAGTCACTGTGATCACCCCTAAGGAAGTTTTCGTAACCCCAGTTCAGGAAACTTCAGCTACCAACGACCACATTATTGCTGTCCCCATTGAAGAACTGGGTGTTATCATTGCTGAAAAGGATGATGAGAAGCCTGAAACTAATAATGATGATTGCTGCCGCTTCTGTCTTCAGGATGGATTGTTGGAAAGACTCGAAGAACCCTGCGGTTGCATTGGAAGTGTGAAGTTTGCTCACAGGAAATGCGTTGCTCAGTGGTGCAACACCAAGCGTGACACAACATGTGAGATCTGCAAGCAGCCATACCAACCAAACTATGCTGTGACTACACCACCTCCTTATGATGATGTGGAAATATACATGAGTGAGCGTTGGAGGATTCCTTTTACTGAAATTCGGGTCCTCACACCCCTGCAGCTGGCGGAGCGCGGCATCAACCGCCTACTCCGATCAATGAATGTGGACTTCAGCTTGAGGAACCCCACTGTGGGAATGATCTTCGGAACTGTACTCCTCCTCCTTTTTGCAGCAATGATTATAAGGGATGCTTACCACTATACGCCATCCAAGGAGGATAAACTTACTCACATTCTGTTTTGTGTTCTGATGGTTATCATTCCTCCTATCTATATCTTATCATGGATTGTGGAATGCAGGGACCAGAGAGAAAGGGAGAGGTTACTGATGACGATGACCAGGGAGAGGGAGGGAGAGACCGAGCTTCTTCCATAG 1044 0.4531 MRKWCFQLPWIVLPKPTSSMWHQGINSKTQCQPNIEPDGIRTPGPYFNLQYLSSAYEAFYKLFSFLSFLLTFQFLDHAFMHMICILETVCILSHREMEECKKEDQVTVITPKEVFVTPVQETSATNDHIIAVPIEELGVIIAEKDDEKPETNNDDCCRFCLQDGLLERLEEPCGCIGSVKFAHRKCVAQWCNTKRDTTCEICKQPYQPNYAVTTPPPYDDVEIYMSERWRIPFTEIRVLTPLQLAERGINRLLRSMNVDFSLRNPTVGMIFGTVLLLLFAAMIIRDAYHYTPSKEDKLTHILFCVLMVIIPPIYILSWIVECRDQRERERLLMTMTREREGETELLP* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2865 347 SUPERFAMILY RING/U-box 152 207 - -
Lja1g2865 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 215 IPR013083 -
Lja1g2865 347 ProSiteProfiles Zinc finger RING-CH-type profile. 149 209 IPR011016 GO:0008270
Lja1g2865 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 143 328 - -
Lja1g2865 347 CDD RING_CH-C4HC3_MARCH 157 203 - -
Lja1g2865 347 Pfam RING-variant domain 157 202 IPR011016 GO:0008270
Lja1g2865 347 SMART ringv_2 156 203 IPR011016 GO:0008270
Lja1g2865 347 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 143 328 IPR033275 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2865 141 207 C3H Transcription Factor Family AT1G11020 31.507 9.97e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2865 - - cam:101504331 241.506