Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2864 ATGGAGGGGATAGATATTGGAAAATCATGCTGCTTTGTCACTGATACAAGTGGAATGCAAAATCCTAGAACTCTAAATCAATCATTTTGTCTTTCTTTTGCAAAACTGGCAGAGAACTACCCTGCTGGATTTCCCAGAAAGGTATTTGCAGAGGTAATAGGCACCTTCCTGTTGGTATTTGTGGCAAGTGGTTCTGCTGCTATGAATGCCATTGATGAAAACAAAGTCTCAAAACTTGCAGCTTCACTTGCAGGAGGATTAATCGTGACGGTGATGATTTATTCAATTGGACACATCTCTGGGGCACATATGAATCCAGCTGTTTCCTTAGCTTTTGCCACCGTCCGGCATTTTCCTTGGAAACAGGTCCCATTTTACATTGCAGCTCAACTCATAGGAGCTATTTCCGCATCCTATACACTACAAGTGTTGTTAGCACCAGCAAAGCAACTTGGGACAACTTCACCTTCTGGATCAAATGTTCAAGCACTAATCATGGAAATAGTGTCTACCTTCACCATGGTGTTCATTGCCACGGCTTCCTCTATTGACACAAAAGCAATTGGAGAGCTAGCAGGAGTAGCAGTAGGTTCTTCTGTTAGCATAGCAAGCATTGTCGCCGGACCCATTTCAGGTGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAGGTGCATCCTACAAGGGAATTTGGGTCTATATTCTTGGACCTGTTACTGGGGCACTTTTAGGGGCATGGTCTTACAGTTTGATACAGGATCAAGGAAAGCCCGTTCTTGATATTTCTCAATCTTCTTCCCTCTCATTTTTGTTGCGCCAAAAGATTAGTGAAATTGAGCAAATTAGTAACAACAACCATGATTGCTCGGCGTGA 882 0.432 MEGIDIGKSCCFVTDTSGMQNPRTLNQSFCLSFAKLAENYPAGFPRKVFAEVIGTFLLVFVASGSAAMNAIDENKVSKLAASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFATVRHFPWKQVPFYIAAQLIGAISASYTLQVLLAPAKQLGTTSPSGSNVQALIMEIVSTFTMVFIATASSIDTKAIGELAGVAVGSSVSIASIVAGPISGGSMNPARTLGPAIAGASYKGIWVYILGPVTGALLGAWSYSLIQDQGKPVLDISQSSSLSFLLRQKISEIEQISNNNHDCSA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2864 293 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Lja1g2864 293 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 Gene3D Glycerol uptake facilitator protein. 23 260 IPR023271 -
Lja1g2864 293 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 38 268 - -
Lja1g2864 293 SUPERFAMILY Aquaporin-like 42 258 IPR023271 -
Lja1g2864 293 Pfam Major intrinsic protein 44 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2864 293 PANTHER AQUAPORIN NIP2-1 38 268 IPR034294 -
Lja1g2864 293 CDD MIP 46 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2864 Lja-Chr1 34419500 34422782 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2864 46 277 Major Intrinsic Protein MIP AT5G37820 46.154 6.71e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2864 K09874 - gmx:100788071 328.946