Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2861 ATGGAGGGGACTAACCCAAAAGCAAGCAGCTTCGCCATTGATACAAATGAGCTGCAAAATACCACAACCTCGAAGCGATCTTTTGCGGAGAACTACCCTACTGGCTTTCTGCGAAAGGTATTTGCAGAGATAATAGGCACATTCCTATTGGTGTTTGTGGGAAGTGGTGCTGCAGCTCTGAATGCTGTTGATGAAAACAAAGTTTCAAAGCTTGCAGCTACACTTGCAGGAGGACTCATCGTGACGGTGATGATTTATGCGATTGGACACATCTCTGGCGCACACATGAATCCAGCAGTTTCCTTAGCTTTTGCCACCATCAGGCATTTTCCTTGGAAACAGGTGCCATTTTACATTGGAGCTCAATTCACAGGAGCCATTTCTGCTTCATACACACTGCAAGTGCTATTACAGCCAGCAAAACAGCTTGGGACAACTTCACCTTCTGGATCAAACATTCAAGCACTAGTCATGGAAGTTGTGTTCACTTTTATCTTGATGTTCATTGCCACAGCCGTCACCATTGACACAAAAGCTATTGGACAGCTAGCAGGAGTAGCGGTAGGGTCTTCTATTTGCATAGCAAGCATTGTTGCCGGACCAATATCAGGGGCATCAATGAACCCAGCACGGACACTAGGTCCTGCAATTGCCAGTGCATCCTACAAGGGAATTTGGATCTATTTTGTTGGACCAGTTATTGGGGCAATTTTAGGAGCAGTGTCTTATGATGTAATTCAAGACAAAGAAAAGCAAGCTCTTGAAACTTCACCATCTTCCCTTTCATTCAAGCTCTGCCAGAGTAGTGCAACTGACCAAGTTTAG 825 0.4497 MEGTNPKASSFAIDTNELQNTTTSKRSFAENYPTGFLRKVFAEIIGTFLLVFVGSGAAALNAVDENKVSKLAATLAGGLIVTVMIYAIGHISGAHMNPAVSLAFATIRHFPWKQVPFYIGAQFTGAISASYTLQVLLQPAKQLGTTSPSGSNIQALVMEVVFTFILMFIATAVTIDTKAIGQLAGVAVGSSICIASIVAGPISGASMNPARTLGPAIASASYKGIWIYFVGPVIGAILGAVSYDVIQDKEKQALETSPSSLSFKLCQSSATDQV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2861 274 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 Pfam Major intrinsic protein 35 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 SUPERFAMILY Aquaporin-like 33 249 IPR023271 -
Lja1g2861 274 PANTHER AQUAPORIN NIP2-1 9 257 IPR034294 -
Lja1g2861 274 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 9 257 - -
Lja1g2861 274 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Lja1g2861 274 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Lja1g2861 274 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2861 274 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2861 Lja-Chr1 34404665 34407707 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2861 38 260 Major Intrinsic Protein MIP AT5G37810 48.889 3.89e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2861 K09874 - cit:102612686 342.813