Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2860 ATGCATGGTTTGCAGCAGCAGCAGTACTGTGATGATGATATCTCCCTGAAGATTCCCCTAATTATTGCAGACCAAAACCCTCAGGCTGCAGGTGGTGGTTTGCAGCAAACTTCCGGTAACAGCTCCGGCAATGGTGGCGGCGCCGCCACTTTCCTCAAAACCTGTTTCAATGGCCTCAATGCTTTGGCAGGTGTTGGGATACTGTCGGTTCCATATGCTCTAGCATCTGGAGGGTGGTTAAGTTTGGCTCTTCTGTTTGCTATTGCTGCTGTAGCCTTTTACTCAGGGTTGTTGATGCAAAGATGTATGGATAAGAATTCAAATATCAAAACATATCCAGATATAGGTGAGCTTGCATTTGGAAAGATAGGAAGACTAGTAGTATCAACATCCATGTACACAGAGCTCTACTTAGTTTCAATAGGGTTCTTAATTTTAGAAGGGGATAACTTGAGCAATTTATTTCCCATTATGGAGATTCAAGTGGCTGGTTTAGCAATTGGTGGAAAGCAATTCTTTGTGGTGGTAGCTGCTTTGGTTATCTTACCTACAATGTGGTTAGATAACTTGAGTCTACTTTCTTATGTATCTGCAAGTGGAGTGTTTGCTTCTGCTATCATCATCTTTTCAATATCATGGACTGCAACATTTGATGGAGTTGGTTTTCATGAAAAGGGAACTCTCATTAGTTGGAATGGAATCCCTACAGCTGTTAGCTTGTATGCCTTTTGCTATTGTGCACATCCTGTCTTCCCCACCCTGTACAATTCCATGAGAAAGAAACACCAATTCTCTAATGTTCTACTTGTATGCTTTTTGTTCACCACAGCTGGTTATGCATCTATGGGTATAATTGGCTATCTAATGTTTGGTTCCAAGGTTGAATCACAGGTAACATTAAACTTGCCACTGAACAAAATCAGCTCAAAAATAGCAATATATACTACCTTAGTCAATCCCATAACCAAGTATGCTTTGATGACAACACCAATCACCAATGCTTTGAAGGATTTGCTTCCAAGGAAATACAAGAATAGAGTCACCAACATCTCAATAAGCACTATGCTAGTAATCAGCACTGTCATTATTGCCCTTGCTGTTCCTTTCTTTGGGTACCTCATGTCCCTAGTTGGAGCAATTTTAAGTGTCACAGCTTCTATTTTGCTTCCATGCTTATGCTACTTAAAGATTTCAGGTAAATACAAAAATTTTGGGTGTGAGATGTTCACCATAGTTGCTATCATATTGGCAGCTATAGCAATGGGAATATCTGGGACATATACGTCACTGCTTGAAATAATCCACCATTTGTAA 1314 0.4026 MHGLQQQQYCDDDISLKIPLIIADQNPQAAGGGLQQTSGNSSGNGGGAATFLKTCFNGLNALAGVGILSVPYALASGGWLSLALLFAIAAVAFYSGLLMQRCMDKNSNIKTYPDIGELAFGKIGRLVVSTSMYTELYLVSIGFLILEGDNLSNLFPIMEIQVAGLAIGGKQFFVVVAALVILPTMWLDNLSLLSYVSASGVFASAIIIFSISWTATFDGVGFHEKGTLISWNGIPTAVSLYAFCYCAHPVFPTLYNSMRKKHQFSNVLLVCFLFTTAGYASMGIIGYLMFGSKVESQVTLNLPLNKISSKIAIYTTLVNPITKYALMTTPITNALKDLLPRKYKNRVTNISISTMLVISTVIIALAVPFFGYLMSLVGAILSVTASILLPCLCYLKISGKYKNFGCEMFTIVAIILAAIAMGISGTYTSLLEIIHHL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2860 437 PANTHER AMINO ACID TRANSPORTER AVT1J 51 434 - -
Lja1g2860 437 Pfam Transmembrane amino acid transporter protein 49 427 IPR013057 -
Lja1g2860 437 PANTHER OS05G0424000 PROTEIN-RELATED 51 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2860 Lja-Chr1 34386488 34394376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2860 34 434 Amino Acid or Auxin Permease AAAP Family AT3G28960 59.453 9.17e-177 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2860 K15015 - gmx:100794374 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2860 1 34386488 34394376 Lja1g2860 1 34386488 34394376 ECH