Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2842 ATGGCTCTTCTTGGATTTCTAATTCTTCTGGGGATTTTCTCCTTTGTCTCACATGTAAATGGGTATGGTTATGGGGGTTGGACTAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAATCTAATCAGCCAAGGTTATGGAACTAATACAGCAGCACTTAGCACTGCATTGTTCAACAGTGGCTTGAGCTGTGGAGCATGTTTTCAAATTAAATGTGTGAATGACCCTCAATGGTGCCTTCCTGGTTCCATTGTAGTCACTGCCACCAATTTCTGCCCACCAGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTATTTTCCAGCACATTGCACAATATAAGGCTGGGATTGTACCTGTAGCATACAGAAGGGTAAGATGCAGGAGAAAAGATGGCATCAGGTTCACCATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTCAAGAACAAGATGGCAGGCCATGTCAAGGAACTGGGGGCAAAACTGGCAGAGCAACTCTTACCTGAATGGACAGAGTCTTTCCTTTGTAGTCACCACCAGTAATGGCCACAGCGTGGTCTCCTTCAATGTTGCCCCAGCTAGTTGGTCCTTTGGGCAGACCTACACTGGAAGACAGTTCAACTACTAA 732 0.4604 MALLGFLILLGIFSFVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGTNTAALSTALFNSGLSCGACFQIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVAYRRVRCRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNVAPASWSFGQTYTGRQFNY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2842 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lja1g2842 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Lja1g2842 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Lja1g2842 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Lja1g2842 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lja1g2842 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Lja1g2842 243 Gene3D - 149 241 IPR036749 -
Lja1g2842 243 SMART dpbb_1 62 139 IPR007112 -
Lja1g2842 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Lja1g2842 243 Gene3D - 16 145 IPR036908 -
Lja1g2842 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Lja1g2842 243 SUPERFAMILY PHL pollen allergen 147 238 IPR036749 -
Lja1g2842 243 PANTHER EXPANSIN-A15 6 242 IPR002963 GO:0009664
Lja1g2842 243 SUPERFAMILY Barwin-like endoglucanases 10 167 IPR036908 -
Lja1g2842 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Lja1g2842 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Lja1g2842 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Lja1g2842 243 PANTHER EXPANSIN 6 242 - -
Lja1g2842 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2842 Lja-Chr1 34215522 34217940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2842 1 241 Expansin Gene Family AT2G03090 76.707 3.98e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2842 K20628 - gmx:100791784 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2842 1 34215522 34217940 Lja1g5534 1 95611196 95613735 ECH
Lja1g2842 1 34215522 34217940 Lja4g2138 4 22951568 22953976 ECH
Lja1g2842 1 34215522 34217940 Lja1g2842 1 34215522 34217940 ECH
Lja1g2842 1 34215522 34217940 Lja2g1605 2 15786217 15789106 ECH
Lja2g1171 2 11133267 11134966 Lja1g2842 1 34215522 34217940 ECH