Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2837 ATGAGATCAATGGAGAATACTTCCGGACAAAGAAAGGAAGATCAAAAGTTTGAATTGCCACCGGGTTTTCGATTTCATCCAACAGATGAAGAGCTCATAAGCCACTACCTCACCAAGAAGGTAGTTGACAGTTGCTTCATTGCTATGGCAATTGCTGAAGTTGATTTCAACAAGTGTGAGCCATGGGATTTGCCTGGGTTGGCTAAAACGGGTGAAACAGAGTGGTATTATTTTTGTTTGAGACACAGAAAAAACCCAACTGGTTTAAGAACAAACAGAGCCACTGATGCTGGATATTGGAAGGCCACAGGCAAAGACAAGGAGATAATAACCATGGAAAATGCTTTGATTGGAATGAGGAAAACACTGGTTTTCTACAAGGGAAGAGCTCCAAATGGTGAAAAGACCAATTGGGTTTTGCATGAATACAGATTGGAAGCAAAAGCAAAACATGCTGAATATAATAATCTTCCTAAACCTGAAAAGAGTGAATGGGTTATCTGCAAAGTCTTTAAGAAGAGTCCTTGTGGAAACAAAATACATATTCCAACATTTGGAAGGTTCAACTCCTTTAGAGAGGATCAGGAAACACATGATAACATAGAAGCTCCTAGCTTGGACTTTTCATCTTCTTTGGATAAAGCAAATCCTGCATTCTCCAACCAATGCACAATGATGACACATCAAATTGGGAAGTCACAATCACAGTGCTCAAATTATTTTCTCCCCGAAGAACATTCCATGTTCAGGAGTGGGAAGCAAAATGAGAATGAGGAGTTTTCTCTGGGAAGAGACTTTGATGCTGATAGTGATATCCCCTCTTTGGTATACAACAACAACAATGACATGTTTCAAAGGTGGTTCGGGAATCAAGAGCATTCTTCAGCTTCTTCAGGGAATTTGGACATTGATTGCCTGTGGAATCAAATCACTGATTAA 939 0.3972 MRSMENTSGQRKEDQKFELPPGFRFHPTDEELISHYLTKKVVDSCFIAMAIAEVDFNKCEPWDLPGLAKTGETEWYYFCLRHRKNPTGLRTNRATDAGYWKATGKDKEIITMENALIGMRKTLVFYKGRAPNGEKTNWVLHEYRLEAKAKHAEYNNLPKPEKSEWVICKVFKKSPCGNKIHIPTFGRFNSFREDQETHDNIEAPSLDFSSSLDKANPAFSNQCTMMTHQIGKSQSQCSNYFLPEEHSMFRSGKQNENEEFSLGRDFDADSDIPSLVYNNNNDMFQRWFGNQEHSSASSGNLDIDCLWNQITD* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2837 312 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Lja1g2837 312 SUPERFAMILY NAC domain 16 173 IPR036093 GO:0003677|GO:0006355
Lja1g2837 312 ProSiteProfiles NAC domain profile. 19 173 IPR003441 GO:0003677|GO:0006355
Lja1g2837 312 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 209 306 - -
Lja1g2837 312 Gene3D NAC domain 28 176 IPR036093 GO:0003677|GO:0006355
Lja1g2837 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 206 - -
Lja1g2837 312 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 4 206 - -
Lja1g2837 312 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g2837 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 209 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2837 Lja-Chr1 34185373 34186759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2837 17 308 NAC Transcription Factor Family AT5G07680 44.720 3.06e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g2837 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2837 - - gmx:100782172 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2837 1 34185373 34186759 Lja1g2837 1 34185373 34186759 ECH
Lja1g2837 1 34185373 34186759 Lja2g1601 2 15743213 15745148 ECH