Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2836 ATGGGACGATCACCATGCTGTGAAAAAGTTGGTTTGAAGAAAGGACCATGGACTCCAGAGGAAGATCAGAAGCTCTTGGCTTACATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGACTTCAAAGGTGTGGCAAGAGCTGCAGATTGAGATGGAGCAATTATCTAAGGCCTGATATCAAAAGGGGAAAGTTCAGCTTGCAAGAAGAACAAACCATCATTCAACTGCATGCACTCCTAGGGAACAGGTGGTCAGCAATAGCTACACATCTTTCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACTCATCTAAAGAAAAGGCTAATCAAAATGGGAATTGACCCTGTGACTCACAAGCCCAAGAATGATGCCCTTCACTCTAGCATCGACAATGGCCATTCCAAGGTTGCAGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAGGCTGAAGCAAGGTTGGTCAGAGAATCTAAACTACGTTCACACCTTGGAACAAGCTCTTCTATCTTACCATCACCATCCTCATCATCATTGAACAAACATGATACAGTGAAAGCTTGGAACAATGGTAGTAGTGTTGTTGGTGACCTTGAATCTCCTAAGTCTACCTTATCTTTCTCAGAGAATAATAATAATAATCATAATGATAATAATGTGGCACCAATTATGATAGAGTTTGTGGGGACTTCTTTAGAGAGAGGAATTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGATACAAAGATGGCATGGAGAATTCAATGCCTTTCACCTCTACTACCTTTCATGAGTTGACAATGACCATGGAAGCCACATGGCCACCTTCTGATGAGTCTTTGAGGACCATTACTACTGCTGCTACTACAGCTGCTCGTGCACATGTCCTTGGAGACCCGGTTGTTCAGGAAGGGTTGACCGATCTATTGCTGAATTCTAACTCCGATGAAGATCGGAGTTTGTCGCCGGAGGGTGGTGGAGAGTCTAATAGTGGTGATGGTGGTGATGGTTGTGGCAGTGACTTCTATGAAGATAACAAGAACTATTGGAACAATATTCTTAATTTGGTGAACTCTTCCCCTACTAATTCACCTATGTTTTGA 1137 0.4371 MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLIKMGIDPVTHKPKNDALHSSIDNGHSKVAANLSHMAQWESARLEAEARLVRESKLRSHLGTSSSILPSPSSSSLNKHDTVKAWNNGSSVVGDLESPKSTLSFSENNNNNHNDNNVAPIMIEFVGTSLERGIVKEEGEQEWKGYKDGMENSMPFTSTTFHELTMTMEATWPPSDESLRTITTAATTAARAHVLGDPVVQEGLTDLLLNSNSDEDRSLSPEGGGESNSGDGGDGCGSDFYEDNKNYWNNILNLVNSSPTNSPMF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2836 378 CDD SANT 69 112 IPR001005 -
Lja1g2836 378 Gene3D - 13 66 - -
Lja1g2836 378 CDD SANT 16 61 IPR001005 -
Lja1g2836 378 MobiDBLite consensus disorder prediction 324 351 - -
Lja1g2836 378 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 374 - -
Lja1g2836 378 SMART sant 66 114 IPR001005 -
Lja1g2836 378 SMART sant 13 63 IPR001005 -
Lja1g2836 378 MobiDBLite consensus disorder prediction 174 229 - -
Lja1g2836 378 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g2836 378 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g2836 378 MobiDBLite consensus disorder prediction 324 338 - -
Lja1g2836 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g2836 378 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g2836 378 Gene3D - 69 116 - -
Lja1g2836 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g2836 378 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g2836 378 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g2836 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2836 Lja-Chr1 34175347 34178532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2836 309 378 MYB Transcription Factor Family AT3G01140 46.479 3.56e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g2836 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2836 K09422 - pvy:116112164 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2836 1 34175347 34178532 Lja1g2836 1 34175347 34178532 ECH