Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2834 ATGGAAGGATCAACTGCAGGTGTGGTGATAGGTGCAAGGACTACAATTGAAGATAACCTTCTCAAATGCATGTCCAGCATTATGGAGAAGGAAAATGGCACCCAGTTTCTCAAAGAGCAGGTTGAACAGGTGCCGCAAGAGTTGCAGATTGATTTGATGATCAGATTGCACAAGCATTTGGGGAACAGGGAAGGATCACCTGCAGGTGTAAGGAAAGGCTCATGGACTAAAGTTGAAGATGACCTTCTCAAAGCATGTGTCCAACATTATGGGGAGGGGAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGGTGCCGCAAGAGTTGCAGATTGAGATGGTTGAACTATCTAAGACCAAATATCAAACGGGGAGATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTCTAGGAAACAGATGGTCCCTGATTGCAGGAAGACTTCCTGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCTACATGCGCAGCAGAGCACAGTGCTCTTACAGCAAGAAAGACAAGAACTTGAAGCCCCACCAAGTGATAAAGCCTGTGCCTCGAACATTCTCAAAACCAAAACCAAAACCATCCTCAGATCATCATAGCAATTCAGAAGTTAATGTTAGTAGCCAATTAGTAGCAGCTTGTGCAGCTTCATCTTCAGGGTCGACAAATTGGTGGGAAACTTTGTTAGATGATATGGGAGATGACAATACAATTGCGTTGGATGAAGAGCTCGTTGCTTCAATAACAACAAATGCTTGTGACTTTCTTACAGAAAGTGATCAAACTTGGAGTGACTTTCTTCTTAACGTGAAATTGTAG 852 0.4296 MEGSTAGVVIGARTTIEDNLLKCMSSIMEKENGTQFLKEQVEQVPQELQIDLMIRLHKHLGNREGSPAGVRKGSWTKVEDDLLKACVQHYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLRPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYMRSRAQCSYSKKDKNLKPHQVIKPVPRTFSKPKPKPSSDHHSNSEVNVSSQLVAACAASSSGSTNWWETLLDDMGDDNTIALDEELVASITTNACDFLTESDQTWSDFLLNVKL* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2834 283 ProSiteProfiles Myb-like domain profile. 67 119 IPR001005 -
Lja1g2834 283 Gene3D - 127 193 - -
Lja1g2834 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 174 IPR017930 -
Lja1g2834 283 MobiDBLite consensus disorder prediction 189 214 - -
Lja1g2834 283 Pfam Myb-like DNA-binding domain 125 169 IPR001005 -
Lja1g2834 283 Pfam Myb-like DNA-binding domain 72 119 IPR001005 -
Lja1g2834 283 CDD SANT 74 119 IPR001005 -
Lja1g2834 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Lja1g2834 283 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 69 232 - -
Lja1g2834 283 ProSiteProfiles Myb-like domain profile. 120 170 IPR001005 -
Lja1g2834 283 CDD SANT 128 170 IPR001005 -
Lja1g2834 283 Gene3D - 72 124 - -
Lja1g2834 283 SMART sant 124 172 IPR001005 -
Lja1g2834 283 SMART sant 71 121 IPR001005 -
Lja1g2834 283 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 69 232 - -
Lja1g2834 283 SUPERFAMILY Homeodomain-like 69 166 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2834 Lja-Chr1 34131761 34138823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2834 66 217 MYB Transcription Factor Family AT1G66370 59.355 5.68e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g2834 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2834 - K09422 gmx:100780023 279.641