Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2825 ATGGCAGCTTGCATATTCACTGTGTCACAAGATGGAACTGGAGATTTCCGAACGGTGCAGGAAGCAATCGACGCCGTGCCGCTCGGCAACGTTCGCCGGACAGTGATTCGGGTGTCTCCGGGTATCTACCGGCAGCCGGTGTATGTGCCTAAGACAAAGAATTTCATCACTCTTGCTGGCTTGCACCCTGAGGACACTGTGCTTACCTGGAACAACACTGCCACCAAAATCGAACACCACCAACCTGCTAGAGTGATTGGGACTGGGACATTTGGCTGTGGAAGTACCATTGTGGAAGGGGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCCTCCCCTGAGGGTTCAGGCCAAGCAGTGGCAATTAGAGTGACAGCAGATCGGTGTGCCTTCTACAATTGCAGATTCCTTGGATGGCAGGACACACTGTACTTACATTACGGCAAACAATATTTGAAAGATTGCTATATTGAAGGAAGTGTGGATTTCATCTTTGGCAATAGTACTGCTCTTTTGGAGCATTGTCATATCCACTGCAAGTCTGCAGGGTTCATTACCGCACAGAGTAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGACATTCATACGCATATCTCGGACGACCGTGGGGACCTTTCGGAAGGGTGGTCTTTGCATACACTTACATGGATCCATGTGTAAGGCATGTTGGCTGGGATAATTGGGGGAAAGTTGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGTTCTCCATCCAACCGAGTGAATTGGTGTAGAGAATTGATGGATGAAGAAGCGGAGCAGTTCATCATGCATCCTTTCATTGATCCAGAACCAGAAAGGCCCTGGCTTGCACAGAGAATGTGCTTGAGGATTCCATATTCTGCTTAG 951 0.47 MAACIFTVSQDGTGDFRTVQEAIDAVPLGNVRRTVIRVSPGIYRQPVYVPKTKNFITLAGLHPEDTVLTWNNTATKIEHHQPARVIGTGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGGHSYAYLGRPWGPFGRVVFAYTYMDPCVRHVGWDNWGKVENERSACFYEYRCFGPGCSPSNRVNWCRELMDEEAEQFIMHPFIDPEPERPWLAQRMCLRIPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2825 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Lja1g2825 316 Gene3D - 3 309 IPR012334 -
Lja1g2825 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Lja1g2825 316 PANTHER PECTINESTERASE 1 315 - -
Lja1g2825 316 SUPERFAMILY Pectin lyase-like 3 299 IPR011050 -
Lja1g2825 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2825 Lja-Chr1 34043101 34047266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2825 5 307 Carbohydrate Esterase AT5G47500 38.782 7.20e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2825 K01051 - gmx:100786786 635.95