Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2824 ATGGATGGACCAGTTGGCCGAGGTGGTGGTGCAGGCCTGGACATATATCTACCAAATTATAAATTGGGGAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCTGAGCATGTATTGACTGGTCACAAGGTTGCCATCAAGATCCTTAACCGTCGCAAGATAAAGAACATGGAAATGGAAGAGAAAGTGAGAAGAGAAATCAAAATTTTGAGATTGTTCATGCACCCTCACATCATACGCCTGTATGAGGTCATAGAGACTCCAACTGACATATATGTTGTCATGGAATATGTGAAATCTGGAGAGCTCTTTGATTACATTGTAGAAAAGGGTAGGTTGCAAGAAGATGAGGCCCGTAATTTCTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATCTGAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTTAAGATTGCTGATTTTGGCTTAAGCAACATTATGCGTGATGGACACTTCCTTAAGACAAGTTGTGGAAGCCCTAATTATGCAGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCAGAAGTTGATGTTTGGAGCTGTGGTGTAATTTTGTATGCTCTTCTTTGTGGCACTCTGCCATTTGATGATGAGAACATTCCAAATCTCTTCAAGAAAATAAAGGGAGGGATATACACTCTTCCTAGTCATCTATCTCCTGGTGCTAGAGATTTGATACCCAGAATGCTCGTGGTTGATCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGTCTTCCGCGTTATTTAGCTGTGCCACCTCCAGATACAATGCAACAGGCTAAAAAGATTGATGAGGAGGTCGTTCAGGAAGTCGTGAATATGGGATTTGACAGGAATCAATTGATTGAATCTCTCCGCAACAGGATTCAGAATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCTAGTGGCTATCTGGGAGCTGAATTTCAAGAGACTATGGATTCTGGTTTTAACCAAATGCATCCTGGTGAGGTTGCTTCTTCGGTTGTCGGCCACCGCATTCCAGGCTACATTGACTATCCAGGTGTAGGAATGAGACCACAGTTCCCTGTTGAAAGAAAATGGGCTCTTGGCCTTCAGTCTCGAGCTCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTGAATGTATGCTGGAAGAAGATTGGACACTACAACATGAAGTGCAGGTGGGTTGCTGGCATTCCTGGTCATCATGAAGGAATGGTTAACAACAATACTGCCCATAGCAATCATTACTTTGGAGATGATTCCAGCATTATTGAGAATGATGCTGTTCCTAGTTCGAATGTGGTCAAATTCGAAGTGCAGCTTTACAAAACTCGGGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGCGCTCAGTTTCTTTTCCTGGACCTGTGTGCTGCTTTCCTTGCGCAGCTTCGTGTACTCTAG 1551 0.4346 MDGPVGRGGGAGLDIYLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEVVQEVVNMGFDRNQLIESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGFNQMHPGEVASSVVGHRIPGYIDYPGVGMRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHHEGMVNNNTAHSNHYFGDDSSIIENDAVPSSNVVKFEVQLYKTREEKYLLDLQRVQGAQFLFLDLCAAFLAQLRVL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2824 516 Gene3D Transferase(Phosphotransferase) domain 1 13 350 - -
Lja1g2824 516 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2824 516 Gene3D Kinase associated domain 1, KA1 396 514 - -
Lja1g2824 516 CDD STKc_AMPK_alpha 17 272 - -
Lja1g2824 516 CDD UBA_SnRK1_plant 294 334 - -
Lja1g2824 516 SUPERFAMILY Protein kinase-like (PK-like) 17 289 IPR011009 -
Lja1g2824 516 CDD AMPKA_C 390 513 - -
Lja1g2824 516 SMART uba_6 295 332 IPR015940 -
Lja1g2824 516 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 467 515 IPR001772 -
Lja1g2824 516 Pfam UBA/TS-N domain 294 330 IPR015940 -
Lja1g2824 516 SUPERFAMILY KA1-like 329 515 IPR028375 -
Lja1g2824 516 SUPERFAMILY UBA-like 282 331 IPR009060 GO:0005515
Lja1g2824 516 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2824 516 Pfam Kinase associated domain 1 473 515 IPR001772 -
Lja1g2824 516 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Lja1g2824 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lja1g2824 516 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 515 - -
Lja1g2824 516 PANTHER SERINE/THREONINE KINASE 9 515 - -
Lja1g2824 516 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2824 516 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2824 Lja-Chr1 34032788 34041033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2824 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 1.84e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Lja1g2824 Pkinase 9.4e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2824 K07198 - gmx:100796687 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2824 1 34032788 34041033 Lja1g2824 1 34032788 34041033 ECH