Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2822 ATGGGCTGTGTCAACTCCAAGAAAGCGGTGGCCAGAGCCGCTTCTGCTTCGCCGGTGGGACCCTACGTCGTGCAATCGAGCTCCAGAAAGAGGACCAGCAATGTGCCTTCTTCTGCGGCGGTGTCGGTGGTGGTGGCGGAGCCACCTCCACCAGCTCCTTCAGCTCCTCCACCTGTGTCGGTTTCGGCGTCGGCGTCGCGCTCGTCAAGAGAGCATTTGCGTTCCGGGTCGGTGGTTGTGACCCGAAAGAGCGACGCGAAACCCGAGGTGGAGGAGTGGAAGAAGGGAAGTTTGAGTAGGAGGCTTGGTTTGTCGTCGTCGTCGGGAAGGTTTGTGGAAGCGGAGCAGAACGCGGCTGGTTGGCCTTCTTGGCTCACCTCCATTGCAGGGGAAGCCATTCATGGATGGGTTCCTCTCAAAACAGAGTCTTATGAGAAATTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGACACAGGGAGAATGGTTGCCCTGAAGAAGGTGCGCTTCGACAATCTTCAACCTGAAAGCATAAGATTCATGGCAAGAGAAATCATAATTCTCCGCACACTTGATCACCCAAACATCATGAAATTGGAGGGTATAATCACTTCACAACTATCACATAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGTCTTGTATCTTCTCCCGACATCAAGTTCAGTGAGTCACAGATTAAATGTTACATGAGACAACTGTTAAGTGGACTTGAGCATTGTCACCTCAGAGGTATTATGCATCGAGATATTAAAGTATCAAACATATTAGTGAATGATGAAGGTATTCTCAAAATAGCAGATTTTGGATTAGCAAATACCGTTAACCCGAATAGCAAGATCCCTTTAACAAGTCGTGTAGTGACGCTATGGTATCGCCCTCCTGAGCTATTGATGGGATCAACAAATTATGGAGTCTCAGTGGATCTATGGAGTGTGGGCTGTGTATTTGCTGAACTTTATCTAGGGAAGCCCATCCTTAAGGGTAGAACTGAGGTGGAACAGTTACACAGAATTTTTAAGCTTTGTGGGTCTCCACCTGAGGAGTTCTGGAAAAAGTGTAAGCTTCCTCTTGCAACAATGTTTAAGCCTCAGACTAATTACGAAAGCTCTTTTCGCGAGCGGTGTAAAGGTTTTCCTGCAACTGCTGTAAAGCTTCTTGAGACTTTACTGACCATTGACCCCTACGAGCGCGGGACTGCCTCCTCTGCACTAATGTCCGAGTATTTCAGCACCCTTCCTTATGCTTGCAATCCATCAGTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAAAATCAGGAAGATACACGCAGGAAAAAGTATGGAGGTAAAGTGAGAGAGGCCGTAACATCAAAAAGGCAAAGACGAGTCCAGAAAGTTCTGCAGGACCCTAACAATGTCAATAAGCCAGTTCTGAAAGAGAATACTTCTCATAATGCTTGTAGAGATGATGACGGTAAAGCACATCTTACAAAGGGAAAAGTAGGAGGTGTGCACAAAGGGCAACAAAAATCTTCATATAATGCAAAGTCAGAGGCCCAAAGGGTAAGTGGTAGTAATGGCTATAGTGTGTACTCAGGACCAGCACCAGTTACAGGATCTAGTGGCTTTACCTGGGTGAAAAGGAGAAAACCAGAGGTTTCATCTGTATTATCAGATAGCTCAAGAAGCAAAATCAGTGCACTCGATCCAACCTTTGCGAAAGGCACGTATGATTTAACAAAACACGGGATAGATATTTCAGAAAGGAAACATAGTTACAGCACAAGCCATCAGGATGAGACCTCCAAGGGTGTATTACAGAAGAACCAGGCTCGTCACGGTCTACGAGAATCCTTTGACATAGCTGATACATACCGTTCAAATCATTACATGGAATATGATCTCACAGAAAAAACAGATGCTCAGATAAATACTCAGGGCCACAGAAGACTTGGTGAGCCTGTGGAACAATCAAGACCAGCAATGATCCAACGAAATAAAAGTGATGATTTTCTGCAGTTGAATGCAAATAGCAAGTGGCGATCTGTTCGTAGATCAAGGCTTGGAAGAGGAAAAAAAAAACATTTTATTGGTAGCTCATAA 2148 0.4534 MGCVNSKKAVARAASASPVGPYVVQSSSRKRTSNVPSSAAVSVVVAEPPPPAPSAPPPVSVSASASRSSREHLRSGSVVVTRKSDAKPEVEEWKKGSLSRRLGLSSSSGRFVEAEQNAAGWPSWLTSIAGEAIHGWVPLKTESYEKLDKIGQGTYSSVFRAREVDTGRMVALKKVRFDNLQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSHSIYLVFEYMEHDLAGLVSSPDIKFSESQIKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNDEGILKIADFGLANTVNPNSKIPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHRIFKLCGSPPEEFWKKCKLPLATMFKPQTNYESSFRERCKGFPATAVKLLETLLTIDPYERGTASSALMSEYFSTLPYACNPSVLPKYPPSKEMDAKNQEDTRRKKYGGKVREAVTSKRQRRVQKVLQDPNNVNKPVLKENTSHNACRDDDGKAHLTKGKVGGVHKGQQKSSYNAKSEAQRVSGSNGYSVYSGPAPVTGSSGFTWVKRRKPEVSSVLSDSSRSKISALDPTFAKGTYDLTKHGIDISERKHSYSTSHQDETSKGVLQKNQARHGLRESFDIADTYRSNHYMEYDLTEKTDAQINTQGHRRLGEPVEQSRPAMIQRNKSDDFLQLNANSKWRSVRRSRLGRGKKKHFIGSS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2822 715 MobiDBLite consensus disorder prediction 448 465 - -
Lja1g2822 715 PANTHER CYCLIN-DEPENDENT KINASE 103 599 - -
Lja1g2822 715 MobiDBLite consensus disorder prediction 59 75 - -
Lja1g2822 715 SUPERFAMILY Protein kinase-like (PK-like) 137 434 IPR011009 -
Lja1g2822 715 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2822 715 MobiDBLite consensus disorder prediction 666 685 - -
Lja1g2822 715 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Lja1g2822 715 PANTHER CELL DIVISION PROTEIN KINASE 103 599 - -
Lja1g2822 715 CDD STKc_CDK9_like 144 428 - -
Lja1g2822 715 MobiDBLite consensus disorder prediction 444 465 - -
Lja1g2822 715 MobiDBLite consensus disorder prediction 1 86 - -
Lja1g2822 715 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2822 715 MobiDBLite consensus disorder prediction 20 40 - -
Lja1g2822 715 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Lja1g2822 715 MobiDBLite consensus disorder prediction 604 625 - -
Lja1g2822 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Lja1g2822 715 Gene3D Transferase(Phosphotransferase) domain 1 227 467 - -
Lja1g2822 715 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2822 Lja-Chr1 33999947 34006233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2822 136 543 Core Cell Cycle Gene Families AT5G10270 42.317 1.04e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja1g2822 Pkinase 4.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2822 - - lja:Lj1g3v2982400.1 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2822 1 33999947 34006233 Lja1g2822 1 33999947 34006233 ECH
Lja1g2822 1 33999947 34006233 Lja2g1583 2 15538305 15544635 ECH