Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2821 ATGTCCACCACCACTTCCAACGCCGATGCCGTCACGGCACCGCCGGACCCACCCACCACGCGTCCCACCATCTCCCTCCCTCCGCGCCCCTCTCTTGAGTCCTTCTTCGCCGCCGGCGCTGTTAGTCCCGGACCCATGACGCTTGTCTCCAGCTTCTTCGCAACCGACGACTGCCGCTCCTTCTCACAACTCCTCGCCGGAGCCATGTCCCCGCTTGCATTCCCCGCCGCCGCTGATAAGGATGATGATGGGGCCCACAAGGGCATCGGGTTCAAGCAGAGCAGACCGATGAACTTGGTCATTGCTCGGTCCCCTATGTTTACTATTCCTCCTGGTTTGAGCCCTTCTGGTTTTCTCAACTCCCCTGGTTTCTTTTCCCCTCAGAGCCCTTTTGGGATGTCTCACCAACAGGCTTTGGCACAGGTCACTGCTCAAGCTGTCTTTGCACAATCTCAAATGCAAATGCAAGCTGATTACCAGCCATCTGCAGAAACAACTTCAACTGAAGCACCAGTAGAGCAGCAGTCTTTTACTCTAAATGAAGCTTCAGAGCAGCAAGGGGTAGCATCTGTGTCCGAACCTAGAAATGCTCAGCTAGAAACCTCAGAGCTCCCACCCGCTGATAAGAAATATCAACCTTCTTCCCTGGTCATTGACAAACCTGGTGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAAGTTAAGGGGAGCGATTATCCACGGAGCTACTACAAGTGTACCCACCTGAATTGTCCTGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCGCATAACGGAAATTATCTACAAAGGCCAACATAACCATGAAAAGCCTCAGTCTAATAAGCGTACGAGAGATAATAGTGAGTCAAATGGAACTGCAAACATTCAACCTAAGTCTGAGTCAAACTCACAAGGTTTGTTTGGAAATGTAAACAAAGTTAGTGAAAGCGCACCTGATTGTTCAGTGCCTGAGAGTGACCAGATCTCTAACCAAGGGGCTCCAAGGAACCTAGGATCAAGTGAGAGTGCAGATGTGGGTGATGTAGATAATAGAGAAGAGGGAGATGACATTGAACCAAACCCTAAGAGAAGGAGCACTGATCTTGTGGTTTCTGAAGCACCAGCTGCACCAATGTCCCAGAAAACAGTTACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAGGTTGATCTTCTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAGTGCACTAGTGCAGGATGCAATGTGCGTAAACATGTTGAGAGAGCTTCCACAGACGCTAAAGCTGTGATAACTACATATGAAGGAAAACATAACCATGATGTCCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAGTAGCAATTCAATGCAACCAAAACCACAAAACATGGGGCCTGAGAAGCATCCTTTGCTTAAAGATATGGATTTTGGAAATAATAATAATGACCAGAGACCTGTACATTTACGCTTGAAAGAAGAGCAAATCATAGTATAA 1560 0.4814 MSTTTSNADAVTAPPDPPTTRPTISLPPRPSLESFFAAGAVSPGPMTLVSSFFATDDCRSFSQLLAGAMSPLAFPAAADKDDDGAHKGIGFKQSRPMNLVIARSPMFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVFAQSQMQMQADYQPSAETTSTEAPVEQQSFTLNEASEQQGVASVSEPRNAQLETSELPPADKKYQPSSLVIDKPGDDGYNWRKYGQKQVKGSDYPRSYYKCTHLNCPVKKKVERAPDGRITEIIYKGQHNHEKPQSNKRTRDNSESNGTANIQPKSESNSQGLFGNVNKVSESAPDCSVPESDQISNQGAPRNLGSSESADVGDVDNREEGDDIEPNPKRRSTDLVVSEAPAAPMSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDAKAVITTYEGKHNHDVPAARNSSHNTASSNSMQPKPQNMGPEKHPLLKDMDFGNNNNDQRPVHLRLKEEQIIV* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2821 519 SMART WRKY_cls 403 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 SMART WRKY_cls 222 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 MobiDBLite consensus disorder prediction 465 483 - -
Lja1g2821 519 Gene3D WRKY domain 388 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 Gene3D WRKY domain 213 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 MobiDBLite consensus disorder prediction 181 231 - -
Lja1g2821 519 MobiDBLite consensus disorder prediction 181 199 - -
Lja1g2821 519 MobiDBLite consensus disorder prediction 288 342 - -
Lja1g2821 519 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g2821 519 PANTHER WRKY PROTEIN 16 518 - -
Lja1g2821 519 ProSiteProfiles WRKY domain profile. 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 SUPERFAMILY WRKY DNA-binding domain 221 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 MobiDBLite consensus disorder prediction 259 287 - -
Lja1g2821 519 SUPERFAMILY WRKY DNA-binding domain 395 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 ProSiteProfiles WRKY domain profile. 398 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 MobiDBLite consensus disorder prediction 455 490 - -
Lja1g2821 519 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 518 IPR044810 GO:0003700
Lja1g2821 519 MobiDBLite consensus disorder prediction 259 385 - -
Lja1g2821 519 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g2821 519 Pfam WRKY DNA -binding domain 404 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2821 Lja-Chr1 33992536 33998007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2821 20 517 WRKY Transcription Factor Family AT2G03340 50.851 1.25e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g2821 WRKY 4.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2821 - - gmx:100796679 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2821 1 33992536 33998007 Lja1g2821 1 33992536 33998007 ECH