Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2809 ATGGGGTTGAAATTTTCAAAGGAGGCACCACCACACAAAACTGATAGTAGCCTAGGTTTACATCATCACATGATCCATTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGGAGAAGAATGCTCATTGCTGGCTATGATCTTGACATGACGTATATCTCAGATCGGGTATTAGCTATGTCATTTCCTGCAGAGCGTATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTCAAATCTGTGTTGGATATGAGACATTATGACCATTATAAGGTCTATAATCTCTGTATAGAAGAAAGTTATGATTCATCACACTTCTATGGACGTGTGGAAGCATTCCCTTTCGATGACAATCATGTGCCATCTCTTGCAATGGTCAAAGCTTTCTGCGAAAGTGTGGATTCATGGCTGTCACGTGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGTTTAATGGTGTCTGCATACCTAACTTATTGTGGCATGTCATCAGATGAGGCTCTTCAATTGTACGCAGATAGACGAACAACCAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTAGGGTACTGGGAAAGTCTACTATCAATCCCTAGGGGCGCTGGACATGGCCCACCAAAGGTGAACTTGCCTCCACCATGTAGCAGAGAATTGCGGCGAATCCGGCTGTATGATACAGTCAACATTGACACAGTATTCTTTGTGATTTCAGAGCTGCAGGAAGTTCCTAATGAGGTCTATCGTCCCCCTGTGGAAGTTTACCGCGGCTGTAGTAGACGAGTTAAGAAAGGTTATCAGAGAAACAACAGTCCTCGCTATTATATCTCTGTTCTTGAAGGTGATGAAGATGGGCATCAATCAGAAATAGAAGAACCTCGTATTGTAGTTCAAATGGACACAGAGAGTCCTGCAATATATCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATACGAGTAACTGGAGATGTACGCGTCACATTCTACGAGAAAATGATTGGAGGCCGTCTTTTCTACTGTTGTTTCAACACAGCTTTTATTAGGAATAGCTTACTTCAGCTCACAGTAAAGGATTTGGACAAAGTTGGGAAAAAAGGAAGATCAATATGTGGCCCTTCCTTCTGCCTAGAATTACTATTTGGTCCCGCTAATACAGGATATTCATCATCCAGTGTATCCATTGGCGAAACTGATGATTCATTCTAA 1248 0.4135 MGLKFSKEAPPHKTDSSLGLHHHMIHYLTKNFIRNLVSKQRRRMLIAGYDLDMTYISDRVLAMSFPAERMRAMYRNPLWQVKSVLDMRHYDHYKVYNLCIEESYDSSHFYGRVEAFPFDDNHVPSLAMVKAFCESVDSWLSRDPKNIAVIHCMAGKGRTGLMVSAYLTYCGMSSDEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSIPRGAGHGPPKVNLPPPCSRELRRIRLYDTVNIDTVFFVISELQEVPNEVYRPPVEVYRGCSRRVKKGYQRNNSPRYYISVLEGDEDGHQSEIEEPRIVVQMDTESPAIYQKSCLDHYFDKPIRVTGDVRVTFYEKMIGGRLFYCCFNTAFIRNSLLQLTVKDLDKVGKKGRSICGPSFCLELLFGPANTGYSSSSVSIGETDDSF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2809 415 Gene3D Protein tyrosine phosphatase superfamily 28 210 IPR029021 -
Lja1g2809 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Lja1g2809 415 Pfam Tyrosine phosphatase family 131 182 IPR026893 GO:0004721
Lja1g2809 415 SMART PTEN_C2_2 224 396 IPR014020 -
Lja1g2809 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 185 IPR000387 GO:0016311|GO:0016791
Lja1g2809 415 ProSiteProfiles Phosphatase tensin-type domain profile. 42 211 IPR029023 -
Lja1g2809 415 Gene3D - 272 399 - -
Lja1g2809 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 399 - -
Lja1g2809 415 ProSiteProfiles C2 tensin-type domain profile. 242 397 IPR014020 -
Lja1g2809 415 CDD PTP_PTEN 52 207 IPR045101 GO:0016791
Lja1g2809 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 208 IPR029021 -
Lja1g2809 415 Pfam C2 domain of PTEN tumour-suppressor protein 287 394 IPR014020 -
Lja1g2809 415 PANTHER BNAC03G16750D PROTEIN 1 399 - -
Lja1g2809 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 301 396 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2809 Lja-Chr1 33768493 33772914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2809 1 401 Protein tyrosine phosphatase (PTP) family AT5G39400 68.734 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2809 K01110 - gmx:100809938 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2809 1 33768493 33772914 Lja1g2809 1 33768493 33772914 ECH