Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2808 ATGCCTACCTTCTCCTCTCTCCCTCGGTGGATTGGTAAGAAGCTTCTGGGGAAGAGTCCTCTGAGTACAGTGAGCAACATCGGAGACGGCAGCAGCGGCGGCGATGCTGCAACCCCAATTGTTGATGACAGCAGTCCTATCGGAAGCGTGGTGGAGTGTTATGCCTGCACGCAAGTAGGCGTGCCCGTGTTCCACTCCACCAGCTGCGATAGCTGTCATCAACCTCAATGGGAGGCATGTGCGGGATCATCGCTGGTCCCGATACAGAACCGAACAGGGGGGAAGACCCAGAGTTTCAGCGCCCATTCAGGGCCGTTCGGGCACGTAGTGGATCCGAGGAGCAAGCGCGTGCAGGTGTGGAACCGCGCGTTGCTGCTGGCGCGTGGGGTGGCGCTGGCCATAGACCCGTTGTTTTTCTACGCGCTGTCAATCGGGAGAGCGGGGTCGCCGTGCTTGTACATGGACGGTGGGCTTGCGGCGATGGTGACGGTGGCGCGCACGTGTGTGGATGCGGTGCATTTGCTGCACGTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCGAGGGAGTCGCTGGTTGTTGGGTGTGGGAAGCTCGTGTGGGACGCACGTGCCATCGCTTCTCACTACCTGCGATCGTTGAAGGGATTTTGGTTTGATGTCTTCGTTATCCTTCCAGTTCCTCAGGCTGTGTTTTGGTTAGTAGTACCAAAATTGATAAGAGAAGAGAGGATTAAAATCATCATGACCACAATGTTGTTAATTTTCTTGTTCCAGTTTCTTCCCAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAGAAAGTCACAGGCTACATCTTTGGAACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTACTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCTATTCAACGTGTTGCATCCTGCCTGAGGCAGCAGTGTGAGAGAACTCATGGGTGCAATCTCTCTGTGTCATGCTCAGAGGAGGTGTGCTACCAGTCTTTGCTACCAGCAGGCACCATAGGAAATCCATGTGGTGGAAACTCATCAGTAGTGTTAAAAAAGCCTTTGTGCTTGGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCTAGCAATTCTTTAGCTGTAAAGATTCTTTATCCCATTTTTTGGGGCTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACCAGTGACTGGCTAGAAGTTATTTTCAGCATATGCATTGTACTCAGTGGACTACTGCTTTTCACTCTGTTGATTGGTAACATCCAGGTATTCTTGCATGCTGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGCCGTGACATGGAATGGTGGATGAGGAGGAGGCAGCTGCCATCGCGATTAAGACAAAGAGTTCGCCATTTCGAACGGCAAAGGTGGGCAGCTATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGGCTGAGGAGGGACATCAAGCGCTATCTTTGCCTGGACCTCATTAAAAAGGTACCTCTTTTCCATAACTTGGATGATCTTATTCTTGATAACATCTGCGACAGGGTGAAGCCCCTAGTTTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGACCCTGTACAGAGGATGGTGTTCATTGTCCGCGGACGCATAAAGAGAAACCAAAGCCTCAGCAAAGGCATGGTAGCCTCCAGCGTCCTTGAACCTGGAGGGTTTTTAGGCGACGAGCTCCTCTCATGGTGCCTGCGCCGCCCATTCATTGACCGGCTCCCGGCTTCCTCAGCCACATTCATATGCATCGAATCAGCTGAAGCATTTGGCCTCGATGCTCATCACTTGAGGTACATCACTGATCACTTCAGATACAAATTCGCCAACGAGCGGCTGAAGAGAACAGCGAGGTACTACTCATCCAATTGGAGGACATGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGAAGAGGACTAGAGGAGGTCCAGTGACACCTGTGAGGGAGAATAATGGAGGCGCTGATCAACGCAGGCTTTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCACCTTGAATGA 2148 0.5051 MPTFSSLPRWIGKKLLGKSPLSTVSNIGDGSSGGDAATPIVDDSSPIGSVVECYACTQVGVPVFHSTSCDSCHQPQWEACAGSSLVPIQNRTGGKTQSFSAHSGPFGHVVDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGRAGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYLRSLKGFWFDVFVILPVPQAVFWLVVPKLIREERIKIIMTTMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTHGCNLSVSCSEEVCYQSLLPAGTIGNPCGGNSSVVLKKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSDWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVQRMVFIVRGRIKRNQSLSKGMVASSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFICIESAEAFGLDAHHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRTRGGPVTPVRENNGGADQRRLLQYAAMFMSIRPHDHLE* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2808 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 715 - -
Lja1g2808 715 SUPERFAMILY Voltage-gated potassium channels 111 446 - -
Lja1g2808 715 Gene3D Helix hairpin bin 451 516 - -
Lja1g2808 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 56 715 - -
Lja1g2808 715 ProSiteProfiles cAMP/cGMP binding motif profile. 525 604 IPR000595 -
Lja1g2808 715 SMART cnmp_10 525 651 IPR000595 -
Lja1g2808 715 CDD CAP_ED 525 635 IPR000595 -
Lja1g2808 715 Gene3D - 151 448 - -
Lja1g2808 715 Gene3D Jelly Rolls 523 641 IPR014710 -
Lja1g2808 715 Pfam Ion transport protein 118 443 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g2808 715 SUPERFAMILY cAMP-binding domain-like 452 639 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2808 Lja-Chr1 33759851 33765541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2808 44 715 Ion Channels AT5G15410 79.442 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2808 K05391 - gmx:100798823 1239.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2808 1 33759851 33765541 Lja1g2808 1 33759851 33765541 ECH