Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2797 ATGGAACCACCACCCATGGACTCCACCACCACTGTCACATGGCCTGATTATCATCAAACCCAAACCCTAAACACAGTACTCCCATCACCATATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCAACATCTTACCCTACCCATTACCCCTATTACCCTCAAAACCCTAACCCTGCTGCCACTGTTGTAGAACCTGTGCTCAACCCTCCTGGTGTTGATTCCTATGCCCCATTGAATTCCAACCCAGTTTCCCATCTGGGTTATGAACCCATTCCCATTCCCAATCCCAATTTGCCGTACGGTCAAGGCCACGTTGTAGATTCGAATGCGAGCTCGTTGGTGCCGCCGTCTTATGGGTACTACTATGACCCCAATGCTCAGAATTGGGCTGCTAGAGAGGCTGTCAGGCAATATGGTGCAGACCCTTCTGTTTATGGAGCTGGCATCCCTATACCATCAAATGGCTCAGAACAATTGGCTATTGTAAATCCTAGCTCCACATGGTGGACAAATACCACGACTCAACCTCATGGCAATGGAAAATGGAAGAAATACCCAAAGAAACCTAAAATGAAGACTGTGCAACCTGCATATTGTGAAGTTTGCAAGACAGAGTGCACCAGCAAGGATGTACTGGACCAGCATAAATTAGGAAAGAGGCACAAAAAGAACTTGGAGAAACTAAGAGAATCATTAAAACCAGCCCAAGTTCATCCATCTGGGTCGTCTAATCCTGTTATAGGACCACGAGAACAGAACGACAAGGGAAAATCTATCAGTAAGCTTAAGAGTAAGAGGAAAATTGAAACTCCAGAGGATTTGGAGATTAAGAAAAAGAAGGTTCTTGAAGGAGGGGCTGCAGCTAATGCAGTTAGAACCTGTGCTGTATGTAATGTGGTGTGTAATAGTGAGACAGTTTATAATTATCATATTGCAGGAAAAATGCATGCTGCTATGATGAAGAAAGCATCTGGCCTTAGACAACCCAATGCTAGTTAA 999 0.4525 MEPPPMDSTTTVTWPDYHQTQTLNTVLPSPYPPPPPPPPPPSTSYPTHYPYYPQNPNPAATVVEPVLNPPGVDSYAPLNSNPVSHLGYEPIPIPNPNLPYGQGHVVDSNASSLVPPSYGYYYDPNAQNWAAREAVRQYGADPSVYGAGIPIPSNGSEQLAIVNPSSTWWTNTTTQPHGNGKWKKYPKKPKMKTVQPAYCEVCKTECTSKDVLDQHKLGKRHKKNLEKLRESLKPAQVHPSGSSNPVIGPREQNDKGKSISKLKSKRKIETPEDLEIKKKKVLEGGAAANAVRTCAVCNVVCNSETVYNYHIAGKMHAAMMKKASGLRQPNAS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2797 332 MobiDBLite consensus disorder prediction 229 266 - -
Lja1g2797 332 SUPERFAMILY beta-beta-alpha zinc fingers 189 229 IPR036236 -
Lja1g2797 332 Gene3D Classic Zinc Finger 179 228 - -
Lja1g2797 332 Gene3D Classic Zinc Finger 264 323 - -
Lja1g2797 332 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g2797 332 Pfam Zinc-finger of C2H2 type 198 221 - -
Lja1g2797 332 Pfam Zinc-finger of C2H2 type 293 316 - -
Lja1g2797 332 MobiDBLite consensus disorder prediction 1 48 - -
Lja1g2797 332 PANTHER - 39 328 - -
Lja1g2797 332 MobiDBLite consensus disorder prediction 27 48 - -
Lja1g2797 332 SUPERFAMILY beta-beta-alpha zinc fingers 290 322 IPR036236 -
Lja1g2797 332 SMART c2h2final6 197 221 IPR013087 -
Lja1g2797 332 SMART c2h2final6 292 316 IPR013087 -
Lja1g2797 332 PANTHER ZINC FINGER RNA-BINDING PROTEIN 39 328 - -
Lja1g2797 332 SMART ZnF_U1_5 194 228 IPR003604 GO:0003676|GO:0008270
Lja1g2797 332 SMART ZnF_U1_5 289 323 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2797 Lja-Chr1 33639375 33642428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2797 194 326 C2H2 Transcription Factor Family AT5G61190 33.083 3.47e-16 77.8