Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2792 ATGGCTATTTCTCATTGTTTGGTTCCTTTAGCCATTTTCATGGTTCTCTTTGTACAAGCCATGTCCGTTGGCACTGATCTTGATACAGGAGGTTGGTTTGATGCTCGTGCAACCTTCTACGGTGACTTTAAGGGTATAGGAACCATGCAGGGTGCTTGTGGTTATGGTGATCTCTGGAAACAAGGGTATGGGCTTCATACCACAGCACTAAGCACAGCCCTATTCAACAATGGACTTGCATGTGGTGCATGTTTCGAGATCAAGTGTGTCAACTCCGCTTGGTGCAGAAAGGACGCACCCTCAGTCCTACACTTCGACTTGACAGTGTTCATGTTCACCAAAATTGCATGGTATAGAGCAGGTGTTGTCCCTGTCCAAGCTCGCCGTGTTCCGTGCCATAAAATTGGGGGTGTCAAATTTGAGATTAAAGGGAATCCTTATTTTTTGATGGTTTTGGTGTACAATGTTGGAAATGCTGGCGATGTTTCTAGCATGAGTATCAAAGGTTCCAACACTGGCTGGCTTCAAATGGCACACAATTGGGGACAAATTTGGGATGTAGGAACTAATTTGGTAGGACAAGCCTTGTCATTTAGGGTGACTACTAGTGATGGTAAAACATTGGACTTTGTTAATGTTGCCCCTGCACAATGGCAATTTGGACAGACCTATCAGTCCAACTTAAATTTTTAG 693 0.4416 MAISHCLVPLAIFMVLFVQAMSVGTDLDTGGWFDARATFYGDFKGIGTMQGACGYGDLWKQGYGLHTTALSTALFNNGLACGACFEIKCVNSAWCRKDAPSVLHFDLTVFMFTKIAWYRAGVVPVQARRVPCHKIGGVKFEIKGNPYFLMVLVYNVGNAGDVSSMSIKGSNTGWLQMAHNWGQIWDVGTNLVGQALSFRVTTSDGKTLDFVNVAPAQWQFGQTYQSNLNF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2792 230 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lja1g2792 230 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lja1g2792 230 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lja1g2792 230 PANTHER EXPANSIN-A15 102 230 IPR002963 GO:0009664
Lja1g2792 230 PANTHER EXPANSIN-A15 12 101 IPR002963 GO:0009664
Lja1g2792 230 PANTHER EXPANSIN-A21-RELATED 12 101 - -
Lja1g2792 230 PANTHER EXPANSIN-A21-RELATED 102 230 - -
Lja1g2792 230 Pfam Expansin C-terminal domain 138 215 IPR007117 -
Lja1g2792 230 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 137 IPR007112 -
Lja1g2792 230 SUPERFAMILY Barwin-like endoglucanases 14 155 IPR036908 -
Lja1g2792 230 SMART dpbb_1 67 127 IPR007112 -
Lja1g2792 230 SUPERFAMILY PHL pollen allergen 136 226 IPR036749 -
Lja1g2792 230 Gene3D - 18 133 IPR036908 -
Lja1g2792 230 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 147 226 IPR007117 -
Lja1g2792 230 Gene3D - 137 230 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2792 Lja-Chr1 33604375 33605348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2792 32 230 Expansin Gene Family AT5G39280 57.658 1.10e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2792 - - cam:101510232 315.464