Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2791 ATGGCTAGGTCTAACTGTTTGGCTCCTTTAGCCATTTTCATGGTTCTCTTTGTACAATCCATGTCACTTGGCACAGATATTTACACTGGTAGTTGGTTAGATGGTCATGCAACCTTCTACGGTGACATGGCAGGTCATGGAATCTTGGATGGTGCTTGTGGTTATGGTCAAATCAACAACCCTGGATATTATGGGCTTTGGACTACAGCACTAAGCGTAGCTCTATACAACAATGGACTCTCATGTGGTGCATGTTTTGAGGTCAAGTATCTTTGTCCCGGTGGCAACTGGTGTGATCCACCACTAAAACACTTCGACTTGTCAATGAAAATGTTCACCACAATTGCCCCAATTAGCGCGGGGGTCGTCCCTATTCAATTTCGCCGAGTTCCGTGTGTCAGAGCTCAAGGTGTCAATTTTCTAATCAAAGGAAGCCCTAATTTTTTGATTGTCTTGGTGTACAATGTTGCAAATGCTGGCGATGTTTATGCCATGAGTGTCAAAGGTTCCAAAACCGGTTGGATTCCCATGTCACGCAATTGGGGACAAAATTGGAATGTAGGAACTAATTTGGGAGGACAAGCCTTGTCTTTTAGAGTGACTACTAGTGATCGCAAAACCTTGGACTTTATTAATGTTGCCCCTCCCCAGTGGCAATTTGGACAGAGCTATAAGTCCCCAACAAATTTTTAG 693 0.4387 MARSNCLAPLAIFMVLFVQSMSLGTDIYTGSWLDGHATFYGDMAGHGILDGACGYGQINNPGYYGLWTTALSVALYNNGLSCGACFEVKYLCPGGNWCDPPLKHFDLSMKMFTTIAPISAGVVPIQFRRVPCVRAQGVNFLIKGSPNFLIVLVYNVANAGDVYAMSVKGSKTGWIPMSRNWGQNWNVGTNLGGQALSFRVTTSDRKTLDFINVAPPQWQFGQSYKSPTNF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2791 230 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 147 226 IPR007117 -
Lja1g2791 230 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 137 IPR007112 -
Lja1g2791 230 SUPERFAMILY PHL pollen allergen 137 226 IPR036749 -
Lja1g2791 230 SMART dpbb_1 68 127 IPR007112 -
Lja1g2791 230 SUPERFAMILY Barwin-like endoglucanases 31 155 IPR036908 -
Lja1g2791 230 Gene3D - 18 132 IPR036908 -
Lja1g2791 230 Pfam Expansin C-terminal domain 138 215 IPR007117 -
Lja1g2791 230 PANTHER EXPANSIN-A21-RELATED 13 89 - -
Lja1g2791 230 PANTHER EXPANSIN-A15 13 89 IPR002963 GO:0009664
Lja1g2791 230 PANTHER EXPANSIN-A15 92 230 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lja1g2791 230 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lja1g2791 230 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Lja1g2791 230 Gene3D - 137 230 IPR036749 -
Lja1g2791 230 PRINTS Expansin signature 136 148 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin signature 212 228 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin signature 148 169 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin signature 45 59 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin signature 95 112 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Lja1g2791 230 PRINTS Expansin signature 112 125 IPR002963 GO:0009664
Lja1g2791 230 PANTHER EXPANSIN-A21-RELATED 92 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2791 Lja-Chr1 33554313 33555410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2791 24 230 Expansin Gene Family AT5G39260 50.661 1.24e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2791 - - cam:101510232 270.396