Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2789 ATGGCCATGACTCCCTGTTTCCTTGCTTTAGCCATTTTCATTGTTCTTTTTGTTCAAACCATGTCAGCTGGTATTGACCCAAATTGGTATGCTGCTCATGCAACCTTCTATGGAGACATGAGTGGTAAAGAAACCATGCAGGGTGCTTGTGGTTATGGTGATCTTTTCAAACAAGGGTATGGGCTTAATACCGCAGCACTAAGCACAGCACTATTCAACCATGGACTTACTTGTGGTGCATGTTTTGAGATCATGTGTGTCAACTCCCCCTTTTGCATAAAGAACGCAGGCACAATCAAAATTACAGCAACAAATTTTTGTCCTCCCAATTATACCAAGAAAGTTGACATTTGGTGCAACCCGCCACAAAAACACTTTGACTTAACCATGAAAATGTTCACCACAATTGCTGCATACCGTGCTGGGGTTGTCCCTGTTCAATATCGCCGTGTTCCATGCAACAAAATTGGGGGTGTCAAGTTTGAGCTTAATGGGAACCCTAATTTTTTGCTTGTGTTGGTGTACAACGTTGCAAATGCTGGAGATGTTTCTAGCATGAGTGTCAAAGGATCCGGAACGGGATGGCTTCCAATGTCACACAATTGGGGACAAAATTGGAATGTCGGAACTAATGTGGCAGGACAAGCCTTGTCATTTAGGGTTACTACTAGTGATGGTAAAACCTTGTACTTTATGAATGTTGTCCATCCTCGATGGCTATTTGGACAGACGTACCAGTCCAACTTAAATTTTTAG 756 0.4259 MAMTPCFLALAIFIVLFVQTMSAGIDPNWYAAHATFYGDMSGKETMQGACGYGDLFKQGYGLNTAALSTALFNHGLTCGACFEIMCVNSPFCIKNAGTIKITATNFCPPNYTKKVDIWCNPPQKHFDLTMKMFTTIAAYRAGVVPVQYRRVPCNKIGGVKFELNGNPNFLLVLVYNVANAGDVSSMSVKGSGTGWLPMSHNWGQNWNVGTNVAGQALSFRVTTSDGKTLYFMNVVHPRWLFGQTYQSNLNF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2789 251 Gene3D - 158 251 IPR036749 -
Lja1g2789 251 Gene3D - 16 154 IPR036908 -
Lja1g2789 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Lja1g2789 251 SMART dpbb_1 64 148 IPR007112 -
Lja1g2789 251 PANTHER EXPANSIN-A15 14 251 IPR002963 GO:0009664
Lja1g2789 251 SUPERFAMILY Barwin-like endoglucanases 28 176 IPR036908 -
Lja1g2789 251 SUPERFAMILY PHL pollen allergen 157 247 IPR036749 -
Lja1g2789 251 PANTHER EXPANSIN-A21-RELATED 14 251 - -
Lja1g2789 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 158 IPR007112 -
Lja1g2789 251 Pfam Expansin C-terminal domain 159 235 IPR007117 -
Lja1g2789 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Lja1g2789 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Lja1g2789 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Lja1g2789 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Lja1g2789 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Lja1g2789 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Lja1g2789 251 Pfam Lytic transglycolase 64 148 IPR009009 -
Lja1g2789 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Lja1g2789 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2789 Lja-Chr1 33512053 33513349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2789 18 251 Expansin Gene Family AT5G39300 63.830 6.00e-111 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2789 - - gmx:100799337 360.147