Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2788 ATGGCCATGTCTTCCTATTTGGTTCCTCTGGCCATTATCGTGGTTCTTTTTGTTCAAACCGTGTCAGCTGGTAATGGTATTGACCCAAATTGGTATGATGCTCGTGCAACCTTTTATGGGGACATGGGTGGTAAAGGAACCATGCAGGGTGCTTGTGGTTATGGTGATCTCTTCAAAGAAGGATATGGGCTTAATACTGCAGCCCTAAGCACAGCACTATTTAACCATGGACTCACTTGCGGTGCGTGTTTTGAGATTAAGTGTGTCAATTCCCCTAATTGCATAAAGGGTGTAGGCACAATCAAAATTACAGCAACAAATTTTTGTCCTCCAAATTACAGCAAGACCGTTGACATTTGGTGCAACCCACCACAAAAGCACTTTGACTTCACCATGAAAATGTTCACCACAATTGCATTATACAAAGCTGGAGTTATCCCTGTTCAATATCGTCGTGTTCCATGCATTAAAGTTGGGGGTGTCAAGTTTGAGATTAAAGGGAACCCTTACTTTTTCATGGTTTTGGTGTACAATGTTGCAAATGCTGGTGATGTTTCTAGCATGAGTGTCAAAGGTTCCAACACTGGATGGCTTCAAATGGCACACAATTGGGGACAAAATTGGGATGTAGGAACTAAATTGGTAGGACAAGCCTTGTCATTTAGGGTGACTACCAGTGATGGTAAAACCTTAGACTTTGTTAATGTTGCCCCTCCCCAATGGCAATTTGGACAGACCTATCAGTCCAACATAAATTTTTGGCTTAAATACTCTAGGGGTCCCTGA 786 0.4237 MAMSSYLVPLAIIVVLFVQTVSAGNGIDPNWYDARATFYGDMGGKGTMQGACGYGDLFKEGYGLNTAALSTALFNHGLTCGACFEIKCVNSPNCIKGVGTIKITATNFCPPNYSKTVDIWCNPPQKHFDFTMKMFTTIALYKAGVIPVQYRRVPCIKVGGVKFEIKGNPYFFMVLVYNVANAGDVSSMSVKGSNTGWLQMAHNWGQNWDVGTKLVGQALSFRVTTSDGKTLDFVNVAPPQWQFGQTYQSNINFWLKYSRGP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2788 261 SMART dpbb_1 66 150 IPR007112 -
Lja1g2788 261 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Lja1g2788 261 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Lja1g2788 261 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lja1g2788 261 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Lja1g2788 261 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Lja1g2788 261 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Lja1g2788 261 Pfam Lytic transglycolase 66 150 IPR009009 -
Lja1g2788 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Lja1g2788 261 Gene3D - 160 254 IPR036749 -
Lja1g2788 261 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Lja1g2788 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Lja1g2788 261 PANTHER EXPANSIN-A21-RELATED 13 253 - -
Lja1g2788 261 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Lja1g2788 261 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Lja1g2788 261 SUPERFAMILY Barwin-like endoglucanases 30 178 IPR036908 -
Lja1g2788 261 Gene3D - 18 155 IPR036908 -
Lja1g2788 261 PANTHER EXPANSIN-A15 13 253 IPR002963 GO:0009664
Lja1g2788 261 SUPERFAMILY PHL pollen allergen 159 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2788 Lja-Chr1 33480256 33481943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2788 22 253 Expansin Gene Family AT5G39300 66.953 1.61e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2788 - - qsu:112027351 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2788 1 33480256 33481943 Lja1g2788 1 33480256 33481943 ECH