Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2775 ATGGCGTTTATCGGTAAAATAGGAAAGCTACTCAAGAATTCTGCTGTCAAGCACATCAGTCAGGATGTTTCTGTGTCTACTCCTTCGATGTTTCAAGCAATCAGATCCATGTCATCTGCCAAGGTTTTTGTTGGAGGTATTTCATACAGCACTGATGATACAAGTCTGCGAGAAGCTTTTTCTCGTTATGGAGAAGTTATTGAAGCAAAGATTATCGTCGACCATGATTCGCAAAGGTCCAGAGGTTTTGGCTTTGTAACATATGCAACCAGTGAGGATGCATCTTCTGCCATTCAGGCCCTCGATGGCCAGGATCTTCATGGTCGGAGAATACGGGTAAATTACGCTACTGAAAGGTCACGTCCAGGGTTTGGTGGAGGCGGCGGCGGCTATGGTGGCGGTGGCAGCTATGGTGGAGGCGGCAGCTATGGTGAAGGCGGAAGCTATGGTGGAGGCGGAAGCTATGGTGGTGGCGGCAGCTATGGTGTTGGTAACAGCTATGGTGGTGGTGGTCGTGGTAACTACCAATTCAATGAAAATTCCGGTGGTGATCTTGGACCTGCTAGCGGTGAGCTCAGCAGCAACTCTGGTTTTGGATATGGTCAGTTTGGTGGCAACCAAAATGACACAACAGGTGCAGACATAGATGAATTCAATGTGAGTCAGAACAATGTTGAACCTAATGATGAGTATGCTCAAACCAGGTGA 708 0.4774 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRVNYATERSRPGFGGGGGGYGGGGSYGGGGSYGEGGSYGGGGSYGGGGSYGVGNSYGGGGRGNYQFNENSGGDLGPASGELSSNSGFGYGQFGGNQNDTTGADIDEFNVSQNNVEPNDEYAQTR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2775 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Lja1g2775 235 PRINTS Eggshell protein signature 126 141 - -
Lja1g2775 235 PRINTS Eggshell protein signature 182 200 - -
Lja1g2775 235 PRINTS Eggshell protein signature 156 166 - -
Lja1g2775 235 PRINTS Eggshell protein signature 36 52 - -
Lja1g2775 235 MobiDBLite consensus disorder prediction 178 235 - -
Lja1g2775 235 Gene3D - 12 137 IPR012677 -
Lja1g2775 235 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 219 - -
Lja1g2775 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Lja1g2775 235 SMART rrm1_1 41 114 IPR000504 GO:0003723
Lja1g2775 235 SUPERFAMILY RNA-binding domain, RBD 24 149 IPR035979 GO:0003676
Lja1g2775 235 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2775 Lja-Chr1 33249843 33252628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2775 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 32.051 6.40e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2775 K12741 - gmx:100807155 243.047