LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g2773	ATGATGGAGCAAAGACAGATCTTTGTTCTTCATGTGGTGATGATTTTCTTGTTGATCTTGTTAGCAAGTCATGGATGCTATAGTGTTAAAGCTGAGGAAAAAGGAGGAGGAGAAGAAGGTGATAGGATTTTGAAACTCCCTGGTCAGCCAACGGTGTCGTTTCATCAGTTCTCTGGCTATGTCACTGTTAACCAACTTGCTGGTAGAGCTCTCTTTTATTGGCTCACTGAAGCTGCCCAAAATCCTCTCACCAAACCCCTTGTCATTTGGCTCAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCAGAAGAGATTGGCCCATTTAGAATAAACAAAACATCTTCTGGACTCTACATCAACAAGTTCTCATGGAACACGGTGGCCAACCTCTTGTTCTTGGAATCTCCGGCCGGCGTCGGCTTCTCTTACACCAACCGCTCCTCCGACCTCCTCGACACCGGCGACCGCCGCACCGCCAAAGACTCTCTGGAATTTGTAATCAGATGGCTAGAAAGATTCCCACGTTATAAGAACCGGGAGCTTTACATCGCTGGAGAGAGCTATGCAGGCCATTATGTCCCTCAATTAGCAAAGGAAATCATGACCTATAACACCAAAACCAAGCACCCCATCAATCTCAAGGGAATAATGGTTGGGAATGCAGTGACAGACAACTATTATGATAACTTGGGCACGGTGACGTACTGGTGGAGCCATGCTATGATCTCTGATCAAACATACCACCAGCTGATCAGCACTTGTGATTTTCGTCACCAGAAGGAATCAGATGAATGTGAGTCTCTGTATAGCTATGCCATGGATCAAGAGTTTGGAAACATTGATCAGTACAACATCTATGCACCTCCATGTAACAAGTCAGATGGCAGCTCCGCCGCTACTAGTAGCCGCACGATTCGGTTGCCTCACCGTCCCCATCTGGCTTTTAGGAAATATTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCAGATGTTCAGAAAGCACTCCATGCCAACAAAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAACAGAAACTGGAATGACACAGATGTGTCTATTCTTCCAATTTATAGAGAGTTGATGGCTCATGGCATAAGAGTTTGGGTGTTCAGTGGGGATGTAGATTCAGTGGTGCCTGTTACAGCAACAAGATATGCCCTTGCACAGCTTAAAATGACAACTAAAATACCATGGTACCCTTGGTATGTCAAAAAGCAGGTTGGAGGGTGGACAGAGGTGTATGAAGGGCTAACATTTGCCACTGTGAGAGGAGCAGGCCATGAAGTCCCACTATTCAAGCCCAGAGCAGCTCTTCAGTTATTCAAATCGTTCCTTGAAGGGAAGCCTCTCCCAAAGTCCTAA	1425	0.4582	MMEQRQIFVLHVVMIFLLILLASHGCYSVKAEEKGGGEEGDRILKLPGQPTVSFHQFSGYVTVNQLAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTSSGLYINKFSWNTVANLLFLESPAGVGFSYTNRSSDLLDTGDRRTAKDSLEFVIRWLERFPRYKNRELYIAGESYAGHYVPQLAKEIMTYNTKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYHQLISTCDFRHQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNKSDGSSAATSSRTIRLPHRPHLAFRKYSGYDPCTEKYAEIYYNRPDVQKALHANKTGIPYKWTACSEVLNRNWNDTDVSILPIYRELMAHGIRVWVFSGDVDSVVPVTATRYALAQLKMTTKIPWYPWYVKKQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLEGKPLPKS*	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g2773	474	ProSitePatterns	Serine carboxypeptidases, serine active site.	186	193	IPR018202	GO:0004185
	Lja1g2773	474	Pfam	Serine carboxypeptidase	47	468	IPR001563	GO:0004185\|GO:0006508
	Lja1g2773	474	SUPERFAMILY	alpha/beta-Hydrolases	45	472	IPR029058	-
	Lja1g2773	474	Gene3D	-	374	468	-	-
	Lja1g2773	474	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 25	16	473	-	-
	Lja1g2773	474	Gene3D	-	327	364	-	-
	Lja1g2773	474	Gene3D	alpha/beta hydrolase	37	295	IPR029058	-
	Lja1g2773	474	ProSitePatterns	Serine carboxypeptidases, histidine active site.	438	455	IPR033124	GO:0004185
	Lja1g2773	474	PRINTS	Carboxypeptidase C serine protease (S10) family signature	136	146	IPR001563	GO:0004185\|GO:0006508
	Lja1g2773	474	PRINTS	Carboxypeptidase C serine protease (S10) family signature	172	197	IPR001563	GO:0004185\|GO:0006508
	Lja1g2773	474	PRINTS	Carboxypeptidase C serine protease (S10) family signature	438	451	IPR001563	GO:0004185\|GO:0006508
	Lja1g2773	474	PRINTS	Carboxypeptidase C serine protease (S10) family signature	123	135	IPR001563	GO:0004185\|GO:0006508
	Lja1g2773	474	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	16	473	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g2773	Lja-Chr1	33219722	33232585	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g2773	316	471	Calmodulin-binding Proteins	AT2G22960	30.573	4.59e-16	74.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g2773	K16297		-	gmx:100807680	867.07