Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2771 ATGTTTTCATCTTCAACTACTTCTACAACCAAATGGAGGAGGTTCTTTCAACTCTGCACTCTCTTCTGGGTCCTCTTCTTCTCCGGCAACAACCACGCTGTTTCCGCCGTCGATTCCGATGATGGGTCGGTGTTGTTTCAGCTCAGGAATTCACTCTCTGACCCTGAAGGCTTGCTCTCCAGCTGGGACCCCACCAAGGGTTTGAGCCACTGTGCATGGTTTGGTGTCTCCTGCGACCCGAGCTCGCACCGTGTTGTGGCGATCAACGTCACGGGTAACGGAGGTAACCGAAAACACCCTTCTCCGTGTTCTGATTTTACTGAATTTCCCCTATACGGTTTTGGAATTAGGAGGAGCTGTGTGGGTAGTGGAGGGGCTTTGTTTGGGAAGGTTTCACCTTTGTTCAGTAAGCTCACTGAGCTTAGGATTCTGTCGCTTCCCTTTAACGGGTTTGAGGGTGTGATTCCTGATGAAATTTGGGGGATGAACAAGTTGGAGGTTATTGATCTTGAGGGGAACTTGATAAGTGGGTATCTTCCTTCAAGGTTTAGTGGGTTGAGGAGTTTGAGGGTTCTTAATCTTGGGTTTAATAGGATTGTTGGGGAGGTGCCAAATTCATTGTCAAGTGTTGCTAGTTTGGAGATTTTGAATTTGGCTGGGAATGGCATTAATGGGTCTGTTCCTGGTTTTGTTGGGAGGCTCAGAGGGGTGTATCTTTCTTTCAACTTGCTTACCGGGAGTATTCCGCAAGAGATAGGGGATGACTGTGGTAGGCTGGAGCATCTGGATTTGTCTGGTAATTTCTTGACTCTGGAGATACCGAATAGTTTGGGGAATTGTAGTCAGTTGAGGACTATTTCACTGCATTCAAATATATTGCAGGATGTTATTCCAGCTGAACTTGGTAAGCTTAGGAAGCTTGAGGTGTTGGATGTTTCAAGGAATACTCTTGGCGGTTTGGTGCCTCCTGAGCTTGGGCATTGTATGGAGTTATCTGTCCTTGTTCTTTCTAATCTTTTTAATCCGCTTCCAGATGTCAGTGGTATGGCAAGGGACTCTTTGACAGATCAGCTAGTTTCTGTTATTGATGAGTATAATTATTTTGAAGGTCCAATTCCGGTGGAAATTATGAACCTTCCTAAGTTGAAGATACTGTGGGCGCCTAGGGCAAATCTGGAAGACAGTTTTCCGCGCAGTTGGAATGCTTGTGGTAACTTGGAGATGCTCAATTTGGCTCAAAATGATTTCACTGGGGATTTTCCTAATCAACTTAGTCGCTGCAAGAAGCTCCATTTTCTTGATTTAAGCTTTACCAACCTTACCGGCAAGCTTGCTAAAGACCTTCCTGCTCCATGCATGACAGTCTTTGACGTCAGTGGAAATGTCTTATCCGGATCAATTCCTGAATTCTCTGGTAACGCATGTCCCTCAGCTCCTTCCTGGAATGGGAATCTATTTGAATCCGACAACAGGGCCCTTCCGTACGGATTCTTTTTTGCATTAAAGGTTCTTCAAAGGTCCCCTTTGTCGTCACTTGGAGATGTTGGCCGTTCTGTTATTCACAACTTTGGTCAAAACAATTTTATTAGCATGGATTCATTGCCAATAGCGCGTTACAGATTAGGAAAGGGATTTGCTTACGCAATTCTTGTTGGAGAAAACAACCTGACAGGACCGTTTCCTACTAATTTATTTGAGAAATGTGATGGATTAAATGCATTACTTTTAAATGTGAGTTATACTCGGATATCTGGTCAGATTTCTTCCAACTTTGGCAGAATGTGCAAATCATTAAAATTCTTGGATGCATCTGGAAATCAGATTACTGGCACGATCCCCTTTGATTTAGGGGACATGGTATCTCTTGTTGCTCTGAATCTTAGTCGGAACCATTTACAAGGTCAGATTCCCACCAGCCTTGGTCAGTTAAACGATCTGAAGTTTCTCTCCTTGGGCAATAATAACTTCAGTGGCTCCATTCCTACTAGCCTTGATCAGCTGCACTCCTTAGAAGTCTTGGATCTCTCTTCAAATTCTTTTATTGGTGAAATTCCAAAAGGTATTGAGAACTTGAGAAATCTGACTGTTGTTTTGCTCAACAATAACAAACTTTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTCAACGTCTCATTCAATAACTTGTCTGGGTCCTTGCCATCAAATAGCAGCTTGATAAAATGCAGCAGTGCTGTTGGGAATCCATTTTTGCGCTCTTGCATTGGAGTTTCTCTTACTGTGCCATCAGCAGATCAACACGGGGTGGCTGATTATCCTAATTCTTATACTGCTGCACCACCAGAAGATACAGGCAAAACAAGTGGGAATGGATTCACTTCTATTGAAATAGCATGTATAACTTCTGCATCTGCCATTGTTTCTGTTCTTCTAGCCCTAATTGTCCTTTTTGTTTGTACGCGGAAGTGGAATCCAAGGTCCAGGGTTGTTGGGTCTACAAGAAAAGAAGTCACAGTGTTCACTGACGTTGGGTTTCCATTGACATTTGAAAGCGTTGTCCGGGCCACTGGAAGTTTCAATGCAGGCAACTGCATTGGGAATGGGGGATTTGGGGCAACCTATAAGGCAGAGATATCACCAGGAAACTTAGTTGCAATAAAACGTCTCTCGGTGGGGAGATTTCAAGGTGCTCAACAATTCCATGCCGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAATCTTGTCACCCTTATTGGTTATCATGCTAGTGATTCGGAGATGTTTCTCATATACAACTATTTGTCAGGTGGTAATCTGGAAAAGTTTATCCAGGAAAGGTCCACAAGGGCTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTGCATGATCAGTGCGTACCGCGAGTCCTCCATCGAGATGTCAAGCCCAGTAATATCTTGTTGGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGGCTTCTCGGAACTTCAGAAACTCATGCCACCACCGGTGTAGCGGGAACATTCGGTTATGTTGCTCCTGAATACGCCATGACTTGCCGCGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCAGACAAGAAGGCGTTGGATCCTTCATTTTCTTCATATGGGAATGGTTTCAACATTGTAGCGTGGGCATGCATGCTACTCCGGCAAGGCCAGGCAAAAGATTTCTTCACTGCTGGCTTATGGGATGCTGCACCTGCAGATGATTTGGTTGAGGTCCTGCACTTGGCTGTTGTTTGTACAGTTGAGACCCTCTCCACCCGACCGACCATGAAACAGGTTGTGCGGCGGCTGAAGCAACTTCAGCCACCATCGTGTTAA 3414 0.4458 MFSSSTTSTTKWRRFFQLCTLFWVLFFSGNNHAVSAVDSDDGSVLFQLRNSLSDPEGLLSSWDPTKGLSHCAWFGVSCDPSSHRVVAINVTGNGGNRKHPSPCSDFTEFPLYGFGIRRSCVGSGGALFGKVSPLFSKLTELRILSLPFNGFEGVIPDEIWGMNKLEVIDLEGNLISGYLPSRFSGLRSLRVLNLGFNRIVGEVPNSLSSVASLEILNLAGNGINGSVPGFVGRLRGVYLSFNLLTGSIPQEIGDDCGRLEHLDLSGNFLTLEIPNSLGNCSQLRTISLHSNILQDVIPAELGKLRKLEVLDVSRNTLGGLVPPELGHCMELSVLVLSNLFNPLPDVSGMARDSLTDQLVSVIDEYNYFEGPIPVEIMNLPKLKILWAPRANLEDSFPRSWNACGNLEMLNLAQNDFTGDFPNQLSRCKKLHFLDLSFTNLTGKLAKDLPAPCMTVFDVSGNVLSGSIPEFSGNACPSAPSWNGNLFESDNRALPYGFFFALKVLQRSPLSSLGDVGRSVIHNFGQNNFISMDSLPIARYRLGKGFAYAILVGENNLTGPFPTNLFEKCDGLNALLLNVSYTRISGQISSNFGRMCKSLKFLDASGNQITGTIPFDLGDMVSLVALNLSRNHLQGQIPTSLGQLNDLKFLSLGNNNFSGSIPTSLDQLHSLEVLDLSSNSFIGEIPKGIENLRNLTVVLLNNNKLSGQIPAGLANVSTLSAFNVSFNNLSGSLPSNSSLIKCSSAVGNPFLRSCIGVSLTVPSADQHGVADYPNSYTAAPPEDTGKTSGNGFTSIEIACITSASAIVSVLLALIVLFVCTRKWNPRSRVVGSTRKEVTVFTDVGFPLTFESVVRATGSFNAGNCIGNGGFGATYKAEISPGNLVAIKRLSVGRFQGAQQFHAEIKTLGRLHHPNLVTLIGYHASDSEMFLIYNYLSGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKDFFTAGLWDAAPADDLVEVLHLAVVCTVETLSTRPTMKQVVRRLKQLQPPSC* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2771 1137 Pfam Protein kinase domain 861 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2771 1137 SMART LRR_typ_2 304 328 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 186 210 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 162 185 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 619 643 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 256 280 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 667 690 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 231 255 IPR003591 -
Lja1g2771 1137 SMART LRR_typ_2 691 714 IPR003591 -
Lja1g2771 1137 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 16 1136 - -
Lja1g2771 1137 SUPERFAMILY L domain-like 233 735 - -
Lja1g2771 1137 Gene3D Transferase(Phosphotransferase) domain 1 934 1134 - -
Lja1g2771 1137 Pfam Leucine Rich Repeat 258 280 IPR001611 GO:0005515
Lja1g2771 1137 ProSitePatterns Protein kinases ATP-binding region signature. 864 886 IPR017441 GO:0005524
Lja1g2771 1137 ProSiteProfiles Protein kinase domain profile. 858 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2771 1137 Gene3D Phosphorylase Kinase; domain 1 821 933 - -
Lja1g2771 1137 CDD STKc_IRAK 864 1132 - -
Lja1g2771 1137 SUPERFAMILY Protein kinase-like (PK-like) 840 1129 IPR011009 -
Lja1g2771 1137 ProSitePatterns Serine/Threonine protein kinases active-site signature. 978 990 IPR008271 GO:0004672|GO:0006468
Lja1g2771 1137 Gene3D Ribonuclease Inhibitor 38 237 IPR032675 -
Lja1g2771 1137 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Lja1g2771 1137 SMART serkin_6 858 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2771 1137 Gene3D Ribonuclease Inhibitor 238 444 IPR032675 -
Lja1g2771 1137 Gene3D Ribonuclease Inhibitor 446 752 IPR032675 -
Lja1g2771 1137 Pfam Leucine rich repeat 621 679 IPR001611 GO:0005515
Lja1g2771 1137 SUPERFAMILY L domain-like 132 249 - -
Lja1g2771 1137 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2771 Lja-Chr1 33163406 33167325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2771 16 1137 Receptor kinase-like Gene Family AT3G02130 62.314 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Lja1g2771 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2771 - - gmx:100803891 1755.73