Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2769 ATGGCCTCGGAAACCGCTACTAATTCATCTGCTCCCAGTCCCCAACTGGTTTGCAATGCCTTTGTTGATCAGTATTACCATATTCTTCACCATACGCCAGAATCGGTCTATCGGTTTTACCAGGACTCTAGTGTGGTGAGCCGTCCAGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGAATTAATGAGATGATTATATCACTAAATTTCAAGGATTTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCTTACAAGGAAGGGGTGACTGTGCTGGTGACGGGATGCTTGACTGGAAAGGATAACTTGACTAGAAAATTTGCACAATCTTTCTTTCTTGCCCCACAAGAAAATGGCTATTTTGTTCTGAATGATGTGTTTAGGTATTTCGAAGACTCTGAACCATCAGAACAGCATCCAGTTGATGAAGATGTTGATGAAGCTGCTGTTACTGAAACCCCAGAACCAGAACCCGGTTATGCTGTCGACCCTCCTGCACCGGAACCTGTGAATTCTCATGTGAATGAGAGCCAAATTATTGCTGATAAAGCTTCTGAGCTACCAAACCATCCTGAGGCACAGATAGATAATGGAAATAAAGACAATGTAGAACCTCACATTCAGTCAAATGGGAATGATAATTCTCAGGCCACAGAACAGGCTTCCTCAGCTCAAGTGGATGCTCCGAAGAAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGATTTTGGGACCAGCTAGAGCCTATGTGCCTACTAATACTTTAAAGACAGTGCCTAACAAAACTGAGATCCCGGTAGTTGTGTCGGAACAGTCTGCTGCTGTACCTCAAGCTGCACAAGATAGTATTGGCAAACCTGAAGCTGAAAGTAGTGATACTCATGAGGAAGTTGAGGTTTACTCCATTTACGTTCGAAATCTGCCCTTCAATGTGACGGTTGCTCAGTTGGAAGAGGAGTTTAAGAAATTTGGATCCATCAAACCAGGAGGCATCCAAATCAGAAATAATAAGCCACAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCCAAATGCAATGCATAGTGCAGTTAAGGCTTCACCTGTTACTATTGCTGGGCGTTCTGCTATAGTTGAGATGAAGAAGACCACAGCTCGAGTTGGTGGTGGTCCTGGAAGAGTTAGGATTTCACCCGCAAGAGGTGGGTTTCGAAATGACTCTTTTAGGGGTCGTGGGAACTATGGTGTTGGCGGTCGGAGCTTTGGTCGTGTTGATTATGGAAACCGTGGTGGTGACTTTGGCGGTCGAGGCCGCGGGCCTGGCGGACATGGAGAAGGTTATCAGCAAGGGAGAGGGAGAGGTGGCAGTGGCAGGTTCGGTGCAACAAGACGAGATGTTGTTCCCAACTGA 1407 0.4513 MASETATNSSAPSPQLVCNAFVDQYYHILHHTPESVYRFYQDSSVVSRPDSNGVMTSVTTMKGINEMIISLNFKDFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLTRKFAQSFFLAPQENGYFVLNDVFRYFEDSEPSEQHPVDEDVDEAAVTETPEPEPGYAVDPPAPEPVNSHVNESQIIADKASELPNHPEAQIDNGNKDNVEPHIQSNGNDNSQATEQASSAQVDAPKKSYASIVKVQKGILGPARAYVPTNTLKTVPNKTEIPVVVSEQSAAVPQAAQDSIGKPEAESSDTHEEVEVYSIYVRNLPFNVTVAQLEEEFKKFGSIKPGGIQIRNNKPQGYCFGFVEFLSPNAMHSAVKASPVTIAGRSAIVEMKKTTARVGGGPGRVRISPARGGFRNDSFRGRGNYGVGGRSFGRVDYGNRGGDFGGRGRGPGGHGEGYQQGRGRGGSGRFGATRRDVVPN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2769 468 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 455 - -
Lja1g2769 468 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 455 IPR039539 -
Lja1g2769 468 CDD NTF2 13 133 IPR018222 -
Lja1g2769 468 Gene3D - 5 138 - -
Lja1g2769 468 MobiDBLite consensus disorder prediction 205 233 - -
Lja1g2769 468 MobiDBLite consensus disorder prediction 137 176 - -
Lja1g2769 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 365 IPR000504 GO:0003723
Lja1g2769 468 MobiDBLite consensus disorder prediction 193 233 - -
Lja1g2769 468 CDD RRM_SF 307 378 - -
Lja1g2769 468 SUPERFAMILY RNA-binding domain, RBD 301 414 IPR035979 GO:0003676
Lja1g2769 468 MobiDBLite consensus disorder prediction 429 468 - -
Lja1g2769 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Lja1g2769 468 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Lja1g2769 468 Gene3D - 274 420 IPR012677 -
Lja1g2769 468 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Lja1g2769 468 SMART rrm1_1 306 378 IPR000504 GO:0003723
Lja1g2769 468 SUPERFAMILY NTF2-like 13 133 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2769 Lja-Chr1 33137910 33145027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2769 306 382 Eukaryotic Initiation Factors Gene Family AT2G36660 38.272 1.27e-06 48.9